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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = CAA
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56815 (6 seq.)
>W1711412701
MGUY01000062
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
1145
1057
-
Leu
CAA
[ENA]
¡û
>W1711412729
MGUZ01000010
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
20881
20969
+
Leu
CAA
[ENA]
¡û
>W1711412916
MGVE01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
58326
58414
+
Leu
CAA
[ENA]
¡û
>W1711413084
MGVJ01000100
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
2845
2757
-
Leu
CAA
[ENA]
¡û
>W1711413089
MGVK01000002
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
18962
19050
+
Leu
CAA
[ENA]
¡û
>W1711413138
MGVL01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
58317
58405
+
Leu
CAA
[ENA]
¡û
Identical group No.73005 (1 seq.)
>W1711412851
MGVC01000048
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
31501
31589
+
Leu
CAA
[ENA]
¡û
Identical group No.73007 (2 seq.)
>W1711413303
MGVQ01000021
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
7463
7376
-
Leu
CAA
[ENA]
¡û
>W1711413410
MGVT01000071
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
32701
32788
+
Leu
CAA
[ENA]
¡û
Identical group No.73404 (8 seq.)
>W1710917317
LNVX01000389
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
331
416
+
Leu
CAA
[ENA]
¡û
>W1710917318
LNVX01000403
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1496
1581
+
Leu
CAA
[ENA]
¡û
>W1710917348
LNVX01000566
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1984
2069
+
Leu
CAA
[ENA]
¡û
>W1710917376
LNVX01000840
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
8413
8498
+
Leu
CAA
[ENA]
¡û
>C08011145
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
533139
533054
-
Leu
CAA
-
¡û
>WENV170715459
LQAB01001126
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
18592
18507
-
Leu
CAA
[ENA]
¢þ
>C181002102
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
526455
526370
-
Leu
CAA
-
¡û
>ENV000861
AP009510
Environmental sample from ENV division of INSDC
533139
533051
-
Leu
CAA
[ENA]
Identical group No.79543 (3 seq.)
>W1710917320
LNVX01000416
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2308
2393
+
Leu
CAA
[ENA]
¡û
>WENV170715494
LQAB01002449
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1361
1276
-
Leu
CAA
[ENA]
¢þ
>WENV170715688
LQAB01011132
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
505
420
-
Leu
CAA
[ENA]
¢þ
Identical group No.84594 (1 seq.)
>W1711413380
MGVS01000071
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
7220
7135
-
Leu
CAA
[ENA]
¡û
Identical group No.85138 (1 seq.)
>W1711583327
MNXB01000005
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
17038
16953
-
Leu
CAA
[ENA]
¡û
Identical group No.90920 (3 seq.)
>W1711411975
MGTS01000039
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
10882
10796
-
Leu
CAA
[ENA]
¡û
>W1711412326
MGUB01000129
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
6833
6747
-
Leu
CAA
[ENA]
¡û
>W1711412598
MGUJ01000133
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
7611
7525
-
Leu
CAA
[ENA]
¡û
Identical group No.98749 (1 seq.)
>W1910727922
MGUX01000069
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
5490
5406
-
Leu
CAA
[ENA]
¡û
Identical group No.106974 (1 seq.)
>C151053041
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
293767
293683
-
Leu
CAA
[Ensembl]
¡û
Identical group No.112178 (1 seq.)
>W1910727622
MGUO01000230
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
6262
6346
+
Leu
CAA
[ENA]
¡û
Identical group No.113406 (1 seq.)
>W1711412179
MGTX01000032
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
44057
43974
-
Leu
CAA
[ENA]
¡û
Identical group No.113435 (2 seq.)
>W1711412489
MGUG01000059
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
6405
6491
+
Leu
CAA
[ENA]
¡û
>W1711412549
MGUI01000035
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
6912
6829
-
Leu
CAA
[ENA]
¡û
Identical group No.114616 (2 seq.)
>C08004681
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
250684
250601
-
Leu
CAA
[Ensembl]
¡û
>W09107475
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
260979
260896
-
Leu
CAA
[ENA]
¡û
Identical group No.117841 (4 seq.)
>W1711411926
MGTR01000095
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
3655
3741
+
Leu
CAA
[ENA]
¡û
>W1910727571
MGUN01000016
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
18697
18611
-
Leu
CAA
[ENA]
¡û
>W1910727814
MGUU01000005
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
4903
4817
-
Leu
CAA
[ENA]
¡û
>W1910727882
MGUW01000011
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
3627
3541
-
Leu
CAA
[ENA]
¡û
Identical group No.121782 (7 seq.)
>W1712038742
NFJD01000004
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
83954
83869
-
Leu
CAA
[ENA]
¡û
>WENV180231505
OBCN01040292
[OBCN] human gut metagenome; human gut
229
312
+
Leu
CAA
[ENA]
¢þ
>WENV181647688
OGNQ01000372
[OGNQ] metagenome; Human gut stool
10470
10387
-
Leu
CAA
[ENA]
¢þ
>WENV183639838
OQVL01000023
[OQVL] human gut metagenome; human gut
10895
10812
-
Leu
CAA
[ENA]
¢þ
>WENV183643325
OQVO01007702
[OQVO] human gut metagenome; human gut
2030
2113
+
Leu
CAA
[ENA]
¢þ
>WENV183645579
OQVQ01012876
[OQVQ] human gut metagenome; human gut
1694
1777
+
Leu
CAA
[ENA]
¢þ
>WENV183654510
OQWA01054490
[OQWA] human gut metagenome; human gut
218
135
-
Leu
CAA
[ENA]
¢þ
Identical group No.123408 (6 seq.)
>W1711412055
MGTU01000030
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
69072
69155
+
Leu
CAA
[ENA]
¡û
>W1711412420
MGUE01000046
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
9669
9586
-
Leu
CAA
[ENA]
¡û
>W1711412812
MGVB01000062
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
6834
6751
-
Leu
CAA
[ENA]
¡û
>W1711413013
MGVH01000017
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
6855
6938
+
Leu
CAA
[ENA]
¡û
>W1711581887
MNUR01000063
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
4716
4633
-
Leu
CAA
[ENA]
¡û
>WENV183686908
ORMF011069580
[ORMF] groundwater metagenome; groundwater
12
95
+
Leu
CAA
[ENA]
¢þ
Identical group No.123426 (2 seq.)
>W1711412066
MGTV01000008
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
31681
31764
+
Leu
CAA
[ENA]
¡û
>W1711412442
MGUF01000071
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
6922
7005
+
Leu
CAA
[ENA]
¡û
Identical group No.135107 (2 seq.)
>W1711412120
MGTW01000049
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
6308
6391
+
Leu
CAA
[ENA]
¡û
>W1711412294
MGUA01000044
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
12915
12998
+
Leu
CAA
[ENA]
¡û
Identical group No.135118 (1 seq.)
>W1711412666
MGUL01000105
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
11469
11386
-
Leu
CAA
[ENA]
¡û
Identical group No.135119 (1 seq.)
>W1711412969
MGVG01000004
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
10107
10024
-
Leu
CAA
[ENA]
¡û
Identical group No.137199 (2 seq.)
>W1711411982
MGTT01000006
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
59769
59852
+
Leu
CAA
[ENA]
¡û
>W1711412360
MGUC01000032
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
30219
30302
+
Leu
CAA
[ENA]
¡û
Identical group No.137201 (1 seq.)
>W1711413350
MGVR01000317
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
7027
7110
+
Leu
CAA
[ENA]
¡û
Identical group No.144833 (1 seq.)
>W1910727645
MGUP01000321
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
110
27
-
Leu
CAA
[ENA]
¡û
Identical group No.144835 (2 seq.)
>WENV180250287
OBEQ010271501
[OBEQ] groundwater metagenome; groundwater
731
816
+
Leu
CAA
[ENA]
¢þ
>W1910727735
MGUR01000052
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
41138
41055
-
Leu
CAA
[ENA]
¡û
Identical group No.145221 (1 seq.)
>W1711581934
MNUS01000100
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
8823
8909
+
Leu
CAA
[ENA]
¡û
Identical group No.150820 (1 seq.)
>W1910727768
MGUS01000064
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
17701
17616
-
Leu
CAA
[ENA]
¡û
Identical group No.416396 (1 seq.)
>W1711581918
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
6192
6268
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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