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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GGC
HIT:
23 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458032 (4 seq.)
>W1711412178
MGTX01000032
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
96961
97036
+
Ala
GGC
[ENA]
¡û
>W1711412529
MGUH01000124
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
4272
4197
-
Ala
GGC
[ENA]
¡û
>W1711413346
MGVR01000213
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
2457
2532
+
Ala
GGC
[ENA]
¡û
>WENV183679899
ORMF010119308
[ORMF] groundwater metagenome; groundwater
148
223
+
Ala
GGC
[ENA]
¢þ
Identical group No.458174 (8 seq.)
>W1711412069
MGTV01000008
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
200060
199985
-
Ala
GGC
[ENA]
¡û
>W1711412099
MGTW01000003
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
3259
3184
-
Ala
GGC
[ENA]
¡û
>W1711412244
MGTZ01000046
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
11852
11777
-
Ala
GGC
[ENA]
¡û
>W1711412268
MGUA01000012
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
52068
51993
-
Ala
GGC
[ENA]
¡û
>W1711412435
MGUF01000023
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
10794
10719
-
Ala
GGC
[ENA]
¡û
>W1711412484
MGUG01000053
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
14346
14421
+
Ala
GGC
[ENA]
¡û
>W1711412536
MGUI01000011
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
10860
10785
-
Ala
GGC
[ENA]
¡û
>W1711412617
MGUK01000044
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
20148
20223
+
Ala
GGC
[ENA]
¡û
Identical group No.458179 (10 seq.)
>W1711411999
MGTT01000016
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
95154
95079
-
Ala
GGC
[ENA]
¡û
>W1711412334
MGUC01000012
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
142945
143020
+
Ala
GGC
[ENA]
¡û
>W1711412372
MGUD01000002
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
3055
3130
+
Ala
GGC
[ENA]
¡û
>W1711412770
MGVA01000032
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
3714
3789
+
Ala
GGC
[ENA]
¡û
>W1711412802
MGVB01000029
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
13494
13569
+
Ala
GGC
[ENA]
¡û
>W1711412976
MGVG01000016
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
14501
14426
-
Ala
GGC
[ENA]
¡û
>W1711413027
MGVH01000055
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
5757
5682
-
Ala
GGC
[ENA]
¡û
>W1711581899
MNUR01000083
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
19853
19778
-
Ala
GGC
[ENA]
¡û
>WENV183695558
ORMF012409152
[ORMF] groundwater metagenome; groundwater
107
32
-
Ala
GGC
[ENA]
¢þ
>W1910727665
MGUP01000955
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
668
593
-
Ala
GGC
[ENA]
¡û
Identical group No.458190 (1 seq.)
>W1711412871
MGVC01000082
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
21047
21121
+
Ala
GGC
[ENA]
¡û
Identical group No.458193 (3 seq.)
>W1711413325
MGVQ01000112
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
14331
14256
-
Ala
GGC
[ENA]
¡û
>W1711413376
MGVS01000058
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
24790
24864
+
Ala
GGC
[ENA]
¡û
>W1711413402
MGVT01000052
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
471
546
+
Ala
GGC
[ENA]
¡û
Identical group No.464701 (2 seq.)
>C08004650
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
436090
436163
+
Ala
GGC
[Ensembl]
¡û
>W09107469
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
446402
446475
+
Ala
GGC
[ENA]
¡û
Identical group No.464778 (7 seq.)
>W1710917281
LNVX01000291
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
280254
280180
-
Ala
GGC
[ENA]
¡û
>C08011133
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
824236
824164
-
Ala
GGC
-
¡û
>WENV170715778
LQAB01015040
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1160
1086
-
Ala
GGC
[ENA]
¢þ
>WENV170867777
MDTB01151534
[MDTB] marine metagenome; seawater
1209
1284
+
Ala
GGC
[ENA]
¢þ
>C181002090
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
813816
813744
-
Ala
GGC
-
¡û
>C151053014
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
939344
939417
+
Ala
GGC
[Ensembl]
¡û
>ENV000876
AP009510
Environmental sample from ENV division of INSDC
824236
824161
-
Ala
GGC
[ENA]
Identical group No.469799 (24 seq.)
>W1710798721
LJTW01000002
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
40671
40596
-
Ala
GGC
[ENA]
¡û
>W1710799174
LJUK01000022
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
12123
12048
-
Ala
GGC
[ENA]
¡û
>W1711403112
MFST01000079
Unclassified
Candidatus Muproteobacteria bacterium RBG_16_65_31 [MFST]
822
897
+
Ala
GGC
[ENA]
¡û
>WENV180261679
OBEQ011316659
[OBEQ] groundwater metagenome; groundwater
25036
24961
-
Ala
GGC
[ENA]
¢þ
>WENV180320900
OBKQ01050983
[OBKQ] soil metagenome; Clay
403
328
-
Ala
GGC
[ENA]
¢þ
>WENV181166318
OEIU01000086
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
75676
75601
-
Ala
GGC
[ENA]
¢þ
>WENV170378549
CETV01027807
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1815
1740
-
Ala
GGC
[ENA]
¢þ
>WENV170487511
CEVO01064502
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
202
127
-
Ala
GGC
[ENA]
¢þ
>WENV170741054
LULS01005540
[LULS] marine metagenome; Red Sea water column Station 108 - depth 200m
138
63
-
Ala
GGC
[ENA]
¢þ
>C181000804
AP014879
Gammaproteobacteria
Sulfuricaulis limicola HA5 [AP014879]
1802148
1802073
-
Ala
GGC
-
¡û
>C191004445
AP018724
Gammaproteobacteria
Sulfurivermis fontis JG42 [AP018724]
1675235
1675160
-
Ala
GGC
-
¡û
>W1910640207
LSRW01000078
Gammaproteobacteria
Steroidobacter cummioxidans 35Y [LSRW]
58598
58673
+
Ala
GGC
[ENA]
¡û
>W1910714541
MFSW01000147
Unclassified
Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_01_60_12 [MFSW]
6363
6438
+
Ala
GGC
[ENA]
¡û
>W1910714577
MFSY01000039
Unclassified
Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_01_FULL_65_16 [MFSY]
7831
7906
+
Ala
GGC
[ENA]
¡û
>W1910714596
MFSZ01000050
Unclassified
Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_02_FULL_60_13 [MFSZ]
303
228
-
Ala
GGC
[ENA]
¡û
>W1910714629
MFTA01000057
Unclassified
Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_02_FULL_65_16 [MFTA]
2843
2768
-
Ala
GGC
[ENA]
¡û
>W1910727653
MGUP01000756
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
87
162
+
Ala
GGC
[ENA]
¡û
>W1910729210
MGYG01000089
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_43_28 [MGYG]
12367
12441
+
Ala
GGC
[ENA]
¡û
>W1910729219
MGYH01000006
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_45_12 [MGYH]
38663
38735
+
Ala
GGC
[ENA]
¡û
>W1810763192
QQAX01000007
Gammaproteobacteria
Aquicella lusitana DSM 16500 [QQAX]
33021
32949
-
Ala
GGC
[ENA]
¡û
>ENV09003071
ADGO01003453
Compost metagenome contig00001
1573
1498
-
Ala
GGC
[ENA]
¡û
>ENV09003135
ADGO01006296
Compost metagenome contig00001
199
274
+
Ala
GGC
[ENA]
¡û
>W1610662678
LJTW01000002
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
40671
40596
-
Ala
GGC
[ENA]
¡û
>W1610663131
LJUK01000022
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
12123
12048
-
Ala
GGC
[ENA]
¡û
Identical group No.481757 (8 seq.)
>W1711411924
MGTR01000067
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
9043
8968
-
Ala
GGC
[ENA]
¡û
>WENV180258732
OBEQ011036909
[OBEQ] groundwater metagenome; groundwater
2749
2824
+
Ala
GGC
[ENA]
¢þ
>WENV180261048
OBEQ011255318
[OBEQ] groundwater metagenome; groundwater
678
606
-
Ala
GGC
[ENA]
¢þ
>WENV183679874
ORMF010115471
[ORMF] groundwater metagenome; groundwater
453
378
-
Ala
GGC
[ENA]
¢þ
>WENV170006424
AMWB02022595
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
184
109
-
Ala
GGC
[ENA]
¢þ
>W1910727559
MGUN01000004
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
41043
40970
-
Ala
GGC
[ENA]
¡û
>W1910727843
MGUU01000018
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
41050
40977
-
Ala
GGC
[ENA]
¡û
>W1910727915
MGUW01000027
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
41024
40951
-
Ala
GGC
[ENA]
¡û
Identical group No.486704 (5 seq.)
>W1711411962
MGTS01000029
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
40231
40308
+
Ala
GGC
[ENA]
¡û
>W1711412050
MGTU01000025
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
12824
12749
-
Ala
GGC
[ENA]
¡û
>W1711412299
MGUB01000009
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
5920
5997
+
Ala
GGC
[ENA]
¡û
>W1711412413
MGUE01000039
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
12412
12337
-
Ala
GGC
[ENA]
¡û
>W1711412594
MGUJ01000120
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
231
154
-
Ala
GGC
[ENA]
¡û
Identical group No.500893 (11 seq.)
>W1712038713
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
422160
422235
+
Ala
GGC
[ENA]
¡û
>WENV180231332
OBCN01011472
[OBCN] human gut metagenome; human gut
301
376
+
Ala
GGC
[ENA]
¢þ
>WENV180404933
OBSA01096105
[OBSA] human gut metagenome; ENVO:feces
164
239
+
Ala
GGC
[ENA]
¢þ
>WENV181647551
OGNQ01000085
[OGNQ] metagenome; Human gut stool
24143
24218
+
Ala
GGC
[ENA]
¢þ
>WENV181691517
OGOZ01009696
[OGOZ] human gut metagenome; faeces
342
267
-
Ala
GGC
[ENA]
¢þ
>WENV182658441
OJML01000011
[OJML] human gut metagenome; feces
90208
90283
+
Ala
GGC
[ENA]
¢þ
>WENV183070669
OLIS01000220
[OLIS] human gut metagenome; feces
13815
13890
+
Ala
GGC
[ENA]
¢þ
>WENV183640064
OQVL01000996
[OQVL] human gut metagenome; human gut
3691
3766
+
Ala
GGC
[ENA]
¢þ
>WENV183642917
OQVO01000098
[OQVO] human gut metagenome; human gut
24966
25041
+
Ala
GGC
[ENA]
¢þ
>WENV183645451
OQVQ01007387
[OQVQ] human gut metagenome; human gut
2422
2497
+
Ala
GGC
[ENA]
¢þ
>WENV183657105
OQWI01002756
[OQWI] human gut metagenome; human gut
1800
1875
+
Ala
GGC
[ENA]
¢þ
Identical group No.508673 (1 seq.)
>W1711412200
MGTY01000065
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
23125
23050
-
Ala
GGC
[ENA]
¡û
Identical group No.508740 (1 seq.)
>W1711413059
MGVI01000688
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_69_6 [MGVI]
754
679
-
Ala
GGC
[ENA]
¡û
Identical group No.552613 (2 seq.)
>W1710917248
LNVX01000120
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1714
1641
-
Ala
GGC
[ENA]
¡û
>WENV170715944
LQAB01021572
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1375
1448
+
Ala
GGC
[ENA]
¢þ
Identical group No.564184 (1 seq.)
>W1711412680
MGUL01000181
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
1695
1770
+
Ala
GGC
[ENA]
¡û
Identical group No.574334 (4 seq.)
>W1730028194
MGUZ01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
73209
73284
+
Ala
GGC
[ENA]
¡û
>W1730028202
MGVE01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
99368
99293
-
Ala
GGC
[ENA]
¡û
>W1730028210
MGVK01000019
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
69874
69949
+
Ala
GGC
[ENA]
¡û
>W1730028212
MGVL01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
99330
99255
-
Ala
GGC
[ENA]
¡û
Identical group No.592611 (1 seq.)
>W1910727703
MGUQ01000090
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
2864
2937
+
Ala
GGC
[ENA]
¡û
Identical group No.611624 (1 seq.)
>W1910727734
MGUR01000052
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
47008
47083
+
Ala
GGC
[ENA]
¡û
Identical group No.613460 (1 seq.)
>W1711581928
MNUS01000060
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
33862
33787
-
Ala
GGC
[ENA]
¡û
Identical group No.627495 (1 seq.)
>W1910727811
MGUT01000079
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
25459
25387
-
Ala
GGC
[ENA]
¡û
Identical group No.628915 (1 seq.)
>W1711583337
MNXB01000045
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
16328
16402
+
Ala
GGC
[ENA]
¡û
Identical group No.639313 (1 seq.)
>W1910727762
MGUS01000047
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
6584
6657
+
Ala
GGC
[ENA]
¡û
Identical group No.640871 (1 seq.)
>W1711413283
MGVP01000220
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
6487
6414
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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