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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = CAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113444 (11 seq.)
>W1711223927
LXTQ01000030
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
163077
163163
+
Leu
CAA
[ENA]
¡û
>W1711387356
MEGO01000008
Betaproteobacteria
Thiobacillus sp. SCN 64-317 [MEGO]
22595
22509
-
Leu
CAA
[ENA]
¡û
>W1711414509
MGZO01000089
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
26537
26451
-
Leu
CAA
[ENA]
¡û
>W1711423795
MIDJ01000080
Betaproteobacteria
Thiobacillus sp. GWE1_62_9 [MIDJ]
4913
4827
-
Leu
CAA
[ENA]
¡û
>W1711504109
MKUG01000018
Betaproteobacteria
Thiobacillus sp. 65-1402 [MKUG]
9088
9002
-
Leu
CAA
[ENA]
¡û
>W1711506539
MKWM01000028
Betaproteobacteria
Thiobacillus sp. 63-78 [MKWM]
7597
7511
-
Leu
CAA
[ENA]
¡û
>W131160244
AQWL01000001
Betaproteobacteria
Thiobacillus denitrificans DSM 12475 [AQWL]
129347
129433
+
Leu
CAA
[ENA]
¡û
>WENV181190864
OEPS010005608
[OEPS] soil metagenome; soil
295
209
-
Leu
CAA
[ENA]
¢þ
>W1610593862
LDUG01000003
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
72649
72735
+
Leu
CAA
[ENA]
¡û
>W1611008298
LXTQ01000030
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
163077
163163
+
Leu
CAA
[ENA]
¡û
>W1710713337
LDUG01000003
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
72649
72735
+
Leu
CAA
[ENA]
¡û
Identical group No.135315 (1 seq.)
>W131225579
AUDR01000016
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
72098
72181
+
Leu
CAA
[ENA]
¡û
Identical group No.136660 (1 seq.)
>C191003409
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
352132
352218
+
Leu
CAA
-
¡û
Identical group No.142914 (3 seq.)
>W1510741378
CYHH01000006
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
95711
95628
-
Leu
CAA
[ENA]
¡û
>W1610632379
LIPU01000006
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
95711
95628
-
Leu
CAA
[ENA]
¡û
>W1710766765
LIPU01000006
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
95711
95628
-
Leu
CAA
[ENA]
¡û
Identical group No.143079 (1 seq.)
>W1711583420
MNXE01000031
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
78932
78846
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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