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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = CCG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276824 (3 seq.)
>W1711414510
MGZO01000090
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
45963
46039
+
Arg
CCG
[ENA]
¡û
>W1610593876
LDUG01000020
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
30352
30276
-
Arg
CCG
[ENA]
¡û
>W1710713351
LDUG01000020
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
30352
30276
-
Arg
CCG
[ENA]
¡û
Identical group No.287697 (51 seq.)
>W1711385360
MEEC01000256
Betaproteobacteria
Lautropia sp. SCN 70-15 [MEEC]
2902
2826
-
Arg
CCG
[ENA]
¡û
>W1711386461
MEFK01000241
Betaproteobacteria
Thiobacillus sp. SCN 63-374 [MEFK]
7019
6943
-
Arg
CCG
[ENA]
¡û
>W1711387309
MEGN01000001
Betaproteobacteria
Thiobacillus sp. SCN 65-179 [MEGN]
248143
248067
-
Arg
CCG
[ENA]
¡û
>W1711387375
MEGO01000073
Betaproteobacteria
Thiobacillus sp. SCN 64-317 [MEGO]
10442
10366
-
Arg
CCG
[ENA]
¡û
>W1711387402
MEGP01000025
Betaproteobacteria
Thiobacillus sp. SCN 63-57 [MEGP]
44508
44584
+
Arg
CCG
[ENA]
¡û
>W1711414476
MGZN01000201
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYA1_FULL_63_33 [MGZN]
1963
1887
-
Arg
CCG
[ENA]
¡û
>W1711423789
MIDJ01000025
Betaproteobacteria
Thiobacillus sp. GWE1_62_9 [MIDJ]
15364
15288
-
Arg
CCG
[ENA]
¡û
>W1711504048
MKUE01000110
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
15706
15630
-
Arg
CCG
[ENA]
¡û
>W1711504095
MKUF01000015
Betaproteobacteria
Thiobacillus sp. 65-69 [MKUF]
353164
353240
+
Arg
CCG
[ENA]
¡û
>W1711504108
MKUG01000015
Betaproteobacteria
Thiobacillus sp. 65-1402 [MKUG]
15960
15884
-
Arg
CCG
[ENA]
¡û
>W1711506510
MKWL01000022
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
100830
100906
+
Arg
CCG
[ENA]
¡û
>W1711506554
MKWM01000073
Betaproteobacteria
Thiobacillus sp. 63-78 [MKWM]
22935
22859
-
Arg
CCG
[ENA]
¡û
>W1711506587
MKWN01000043
Betaproteobacteria
Thiobacillus sp. 65-29 [MKWN]
69947
70023
+
Arg
CCG
[ENA]
¡û
>W131160251
AQWL01000002
Betaproteobacteria
Thiobacillus denitrificans DSM 12475 [AQWL]
214712
214788
+
Arg
CCG
[ENA]
¡û
>W131163045
AQZM01000002
Betaproteobacteria
Methyloversatilis universalis EHg5 [AQZM]
133877
133953
+
Arg
CCG
[ENA]
¡û
>W131166926
ARCV01000005
Betaproteobacteria
Methyloversatilis thermotolerans NVD [ARCV]
420350
420274
-
Arg
CCG
[ENA]
¡û
>W131168097
ARDU01000010
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
101235
101159
-
Arg
CCG
[ENA]
¡û
>W131170303
ARFL01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ94 [ARFL]
534924
535000
+
Arg
CCG
[ENA]
¡û
>W131186131
ARVV01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ18-153 [ARVV]
225469
225393
-
Arg
CCG
[ENA]
¡û
>W131186644
ARWH01000001
Betaproteobacteria
Methyloversatilis universalis Fam500 [ARWH]
3436289
3436365
+
Arg
CCG
[ENA]
¡û
>C025380
CP000116
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [CP000116]
157660
157736
+
Arg
CCG
[Ensembl]
¡û
>WENV180254538
OBEQ010638613
[OBEQ] groundwater metagenome; groundwater
1205
1129
-
Arg
CCG
[ENA]
¢þ
>WENV180297008
OBJA01007440
[OBJA] soil metagenome; sediment, water from around vicinity
4069
4145
+
Arg
CCG
[ENA]
¢þ
>WENV180310880
OBJT01043030
[OBJT] soil metagenome; soil
471
395
-
Arg
CCG
[ENA]
¢þ
>WENV181167736
OEIU01065881
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
170
94
-
Arg
CCG
[ENA]
¢þ
>WENV181223045
OFDC01001381
[OFDC] hot springs metagenome; Water
3
79
+
Arg
CCG
[ENA]
¢þ
>WENV181227588
OFDN01019909
[OFDN] hot springs metagenome; Water
2083
2159
+
Arg
CCG
[ENA]
¢þ
>WENV181312217
OFJB01056630
[OFJB] sludge metagenome; sludge
663
739
+
Arg
CCG
[ENA]
¢þ
>WENV181411827
OGCI01050417
[OGCI] hot springs metagenome; Hot spring water
179
103
-
Arg
CCG
[ENA]
¢þ
>WENV181414822
OGCL01001531
[OGCL] hot springs metagenome; Hot spring water
17810
17886
+
Arg
CCG
[ENA]
¢þ
>W141216080
AZUP01000001
Betaproteobacteria
Methyloversatilis discipulorum FAM1 [AZUP]
2868235
2868311
+
Arg
CCG
[ENA]
¡û
>WENV170006546
AMWB02031160
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
2930
2854
-
Arg
CCG
[ENA]
¢þ
>WENV170007412
AMWB02119047
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
34
110
+
Arg
CCG
[ENA]
¢þ
>WENV170650114
JRYD01012029
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
3662
3586
-
Arg
CCG
[ENA]
¢þ
>WENV170652614
JRYH01009156
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
14579
14503
-
Arg
CCG
[ENA]
¢þ
>WENV170653114
JRYI01004321
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
1013
1089
+
Arg
CCG
[ENA]
¢þ
>WENV170654734
JRYL01010574
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
472
396
-
Arg
CCG
[ENA]
¢þ
>WENV170713185
LNFM01025748
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5424
5348
-
Arg
CCG
[ENA]
¢þ
>C181043018
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
46208
46132
-
Arg
CCG
-
¡û
>C181081464
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
4882541
4882617
+
Arg
CCG
-
¡û
>C181165161
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
3092217
3092141
-
Arg
CCG
-
¡û
>C181176832
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
46202
46126
-
Arg
CCG
-
¡û
>W09101576
AAFH01000002
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [AAFH]
508634
508710
+
Arg
CCG
[ENA]
¡û
>W1810005517
BFBP01000022
Betaproteobacteria
Azospira sp. I13 [BFBP]
1047
1123
+
Arg
CCG
[ENA]
¡û
>W1810444917
PZKC01000010
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
83225
83301
+
Arg
CCG
[ENA]
¡û
>W1810679169
QKOE01000008
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
34730
34654
-
Arg
CCG
[ENA]
¡û
>W11114398
ADDK02000001
Betaproteobacteria
Azospira oryzae PS [ADDK]
1747912
1747988
+
Arg
CCG
[ENA]
¡û
>W11162834
AFHG01000053
Betaproteobacteria
Methyloversatilis universalis FAM5 [AFHG]
140890
140814
-
Arg
CCG
[ENA]
¡û
>C121006927
CP003153
Betaproteobacteria
Azospira oryzae PS [CP003153]
964543
964619
+
Arg
CCG
[Ensembl]
¡û
>W1610617582
LGUD01000001
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
504449
504525
+
Arg
CCG
[ENA]
¡û
>W1710743132
LGUD01000001
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
504449
504525
+
Arg
CCG
[ENA]
¡û
Identical group No.407891 (1 seq.)
>W1711583417
MNXE01000031
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
22442
22518
+
Arg
CCG
[ENA]
¡û
Identical group No.565160 (5 seq.)
>W131225557
AUDR01000012
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
128661
128586
-
Arg
CCG
[ENA]
¡û
>WENV170008102
AMZC01001728
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1339
1264
-
Arg
CCG
[ENA]
¢þ
>W1510741365
CYHH01000003
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
37369
37444
+
Arg
CCG
[ENA]
¡û
>W1610632366
LIPU01000003
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
37369
37444
+
Arg
CCG
[ENA]
¡û
>W1710766752
LIPU01000003
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
37369
37444
+
Arg
CCG
[ENA]
¡û
Identical group No.572228 (1 seq.)
>C191003406
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
119294
119369
+
Arg
CCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK