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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = CGT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456007 (32 seq.)
>W1711135994
LUZR01000078
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
5954
6029
+
Thr
CGT
[ENA]
¡û
>W1711259934
LYVQ01000370
Betaproteobacteria
Pelomonas sp. KK5 [LYVQ]
1565
1490
-
Thr
CGT
[ENA]
¡û
>W1711387452
MEGQ01000068
Betaproteobacteria
Thiomonas sp. SCN 64-16 [MEGQ]
3478
3403
-
Thr
CGT
[ENA]
¡û
>W1711583429
MNXE01000046
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
126181
126256
+
Thr
CGT
[ENA]
¡û
>C171103249
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
2849735
2849660
-
Thr
CGT
-
¡û
>W131236713
AUMO01000122
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
5606
5531
-
Thr
CGT
[ENA]
¡û
>WENV180016721
FSVW01000292
[FSVW] metagenome; soil
3168
3093
-
Thr
CGT
[ENA]
¢þ
>WENV180016773
FSVW01001757
[FSVW] metagenome; soil
5120
5045
-
Thr
CGT
[ENA]
¢þ
>WENV180019725
FTCK01000419
[FTCK] metagenome; soil
5926
5851
-
Thr
CGT
[ENA]
¢þ
>WENV180028823
FTJH01022487
[FTJH] metagenome; soil
593
668
+
Thr
CGT
[ENA]
¢þ
>WENV181227216
OFDN01003462
[OFDN] hot springs metagenome; Water
5490
5565
+
Thr
CGT
[ENA]
¢þ
>WENV181231826
OFEK01071061
[OFEK] activated sludge metagenome; Anaerobic digester
475
400
-
Thr
CGT
[ENA]
¢þ
>WENV181286377
OFGV01026980
[OFGV] soil metagenome; Clay
365
440
+
Thr
CGT
[ENA]
¢þ
>WENV181293704
OFHG01017197
[OFHG] soil metagenome; Clay
833
908
+
Thr
CGT
[ENA]
¢þ
>WENV181294863
OFHH01056481
[OFHH] soil metagenome; Clay
466
391
-
Thr
CGT
[ENA]
¢þ
>WENV181414467
OGCL01000427
[OGCL] hot springs metagenome; Hot spring water
12482
12407
-
Thr
CGT
[ENA]
¢þ
>W141223662
BADL01000396
Betaproteobacteria
Ideonella sp. B508-1 [BADL]
1919
1844
-
Thr
CGT
[ENA]
¡û
>W10105784
ACXV01000006
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
1374
1299
-
Thr
CGT
[ENA]
¡û
>C10113331
CP002021
Betaproteobacteria
Thiomonas intermedia [CP002021]
1925975
1926050
+
Thr
CGT
[Ensembl]
¡û
>W11108104
ACXV01000006
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
1374
1299
-
Thr
CGT
[ENA]
¡û
>W1511432391
JUGM01000008
Betaproteobacteria
Methylibium sp. CF059 [JUGM]
187140
187065
-
Thr
CGT
[ENA]
¡û
>W1511552101
JZUE01000005
Betaproteobacteria
Aquincola tertiaricarbonis MIMtkpLc11 [JZUE]
131164
131239
+
Thr
CGT
[ENA]
¡û
>C121016347
FP475956
Betaproteobacteria
Thiomonas arsenitoxydans 3As [FP475956]
2174733
2174808
+
Thr
CGT
[Ensembl]
¡û
>W1610085418
CTRJ01000005
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
233250
233324
+
Thr
CGT
[ENA]
¡û
>W1610085471
CTRK01000039
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
151900
151975
+
Thr
CGT
[ENA]
¡û
>W1610085512
CTRL01000039
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
151922
151996
+
Thr
CGT
[ENA]
¡û
>W1610085551
CTRM01000021
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
4716
4641
-
Thr
CGT
[ENA]
¡û
>W1610947114
LUZR01000078
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
5954
6029
+
Thr
CGT
[ENA]
¡û
>W1710090007
CTRJ01000005
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
233250
233324
+
Thr
CGT
[ENA]
¡û
>W1710090060
CTRK01000039
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
151900
151975
+
Thr
CGT
[ENA]
¡û
>W1710090101
CTRL01000039
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
151922
151996
+
Thr
CGT
[ENA]
¡û
>W1710090140
CTRM01000021
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
4716
4641
-
Thr
CGT
[ENA]
¡û
Identical group No.458205 (3 seq.)
>W1711414528
MGZO01000131
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
3136
3211
+
Thr
CGT
[ENA]
¡û
>WENV180311269
OBJT01191997
[OBJT] soil metagenome; soil
225
300
+
Thr
CGT
[ENA]
¢þ
>WENV181190841
OEPS010004799
[OEPS] soil metagenome; soil
2429
2354
-
Thr
CGT
[ENA]
¢þ
Identical group No.496524 (11 seq.)
>W1711386439
MEFI01000119
Betaproteobacteria
Thiobacillus sp. SCN 63-1177 [MEFI]
17
92
+
Thr
CGT
[ENA]
¡û
>W1711387404
MEGP01000029
Betaproteobacteria
Thiobacillus sp. SCN 63-57 [MEGP]
1616
1691
+
Thr
CGT
[ENA]
¡û
>W1711414489
MGZN01000827
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYA1_FULL_63_33 [MGZN]
21
96
+
Thr
CGT
[ENA]
¡û
>W1711504051
MKUE01000119
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
1388
1463
+
Thr
CGT
[ENA]
¡û
>W1711504137
MKUG01000171
Betaproteobacteria
Thiobacillus sp. 65-1402 [MKUG]
53145
53220
+
Thr
CGT
[ENA]
¡û
>W1711506518
MKWL01000023
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
58125
58050
-
Thr
CGT
[ENA]
¡û
>W131168091
ARDU01000008
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
52992
52917
-
Thr
CGT
[ENA]
¡û
>C028504
CP000116
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [CP000116]
1820647
1820722
+
Thr
CGT
[Ensembl]
¡û
>WENV181192023
OEPS010351624
[OEPS] soil metagenome; soil
137
212
+
Thr
CGT
[ENA]
¢þ
>WENV170006850
AMWB02058608
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1800
1875
+
Thr
CGT
[ENA]
¢þ
>W09101574
AAFH01000001
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [AAFH]
81559
81484
-
Thr
CGT
[ENA]
¡û
Identical group No.565165 (1 seq.)
>W131225591
AUDR01000019
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
34383
34308
-
Thr
CGT
[ENA]
¡û
Identical group No.572230 (1 seq.)
>C191003415
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
467508
467583
+
Thr
CGT
-
¡û
Identical group No.602871 (3 seq.)
>W1510741385
CYHH01000011
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
22469
22544
+
Thr
CGT
[ENA]
¡û
>W1610632386
LIPU01000011
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
22469
22544
+
Thr
CGT
[ENA]
¡û
>W1710766772
LIPU01000011
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
22469
22544
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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