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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Line Islands Corals, microbial fraction from water of Palmyra (SRP000140)
Anticodon = CAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306714 (18 seq.)
>W1711191106
LWSJ01000005
Planctomycetota
Roseimaritima ulvae [LWSJ]
20399
20473
+
Met
CAT
[ENA]
¡û
>W131050196
AMWG01000021
Planctomycetota
Rhodopirellula baltica SWK14 [AMWG]
207448
207524
+
Met
CAT
[ENA]
¡û
>W131065041
ANMO01000216
Planctomycetota
Rhodopirellula europaea 6C [ANMO]
383068
383141
+
Met
CAT
[ENA]
¡û
>W131066004
ANOF01000188
Planctomycetota
Rhodopirellula europaea SH398 [ANOF]
57556
57480
-
Met
CAT
[ENA]
¡û
>C016640
BX119912
Planctomycetota
Rhodopirellula baltica [BX119912]
3655905
3655829
-
Met
CAT
[Ensembl]
¡û
>W141041929
AMCW01000055
Planctomycetota
Rhodopirellula baltica SH28 [AMCW]
89633
89557
-
Met
CAT
[ENA]
¡û
>WENV180587869
OCOO01082987
[OCOO] marine metagenome; seawater
224
298
+
Met
CAT
[ENA]
¢þ
>WENV182553727
OJCR01025058
[OJCR] seawater metagenome; Sea water
788
714
-
Met
CAT
[ENA]
¢þ
>ENV08000879
ABMK01229656
marine metagenome; microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands)
9
83
+
Met
CAT
[ENA]
¡û
>WENV170595859
FUFK012003154
[FUFK] metagenome; unknown
377
450
+
Met
CAT
[ENA]
¢þ
>W1910938954
NIZW01000015
Planctomycetota
Rhodopirellula bahusiensis SWK21 [NIZW]
167553
167479
-
Met
CAT
[ENA]
¡û
>W1911146636
NPDI01000047
Planctomycetota
Rhodopirellula sp. MGV [NPDI]
90784
90858
+
Met
CAT
[ENA]
¡û
>SRA1000862
SRR001048.11088
Line Islands Corals, microbial fraction from water of Palmyra (SRP000140)
9
83
+
Met
CAT
[SRA]
>SRA1000877
SRR001048.183293
Line Islands Corals, microbial fraction from water of Palmyra (SRP000140)
9
83
+
Met
CAT
[SRA]
>W1810237735
PPHI01000089
Planctomycetota
Rhodopirellula baltica BR-MGV [PPHI]
70765
70691
-
Met
CAT
[ENA]
¡û
>W1511646522
LECT01000031
Planctomycetota
Rhodopirellula islandica K833 [LECT]
166262
166336
+
Met
CAT
[ENA]
¡û
>W11156023
AFAR01000103
Planctomycetota
Rhodopirellula baltica WH47 [AFAR]
20409
20333
-
Met
CAT
[ENA]
¡û
>W1610992709
LWSJ01000005
Planctomycetota
Roseimaritima ulvae [LWSJ]
20399
20473
+
Met
CAT
[ENA]
¡û
Identical group No.551034 (3 seq.)
>ENV08000873
ABMK01166720
marine metagenome; microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands)
82
10
-
Met
CAT
[ENA]
¡û
>WENV170441096
CEUV01147993
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
837
765
-
Met
CAT
[ENA]
¢þ
>SRA1000874
SRR001048.159846
Line Islands Corals, microbial fraction from water of Palmyra (SRP000140)
82
10
-
Met
CAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK