tRNA genes clustered and arranged according to each identical group

Line Islands Corals, viral fraction from water of Palmyra (SRP000141)

Anticodon = GTT

HIT: 8 Group(s).
Download Sequence Representative sequence of each cluster
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Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.1800 (8 seq.)
>ENV08000898 ABML01066553 Marine metagenome ; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands) 1 94 + Asn GTT [ENA]
>WENV170358595 CETK01112828 [CETK] marine metagenome genome assembly TARA_111_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 848 753 - Asn GTT [ENA]
>WENV170365440 CETN01075498 [CETN] marine metagenome genome assembly TARA_122_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 490 585 + Asn GTT [ENA]
>WENV170424522 CEUO01185469 [CEUO] marine metagenome genome assembly TARA_124_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 117 22 - Asn GTT [ENA]
>WENV170443442 CEUW01211090 [CEUW] marine metagenome genome assembly TARA_122_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 684 779 + Asn GTT [ENA]
>WENV170457935 CEVB01011035 [CEVB] marine metagenome genome assembly TARA_124_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 3541 3636 + Asn GTT [ENA]
>WENV170892043 MDTD01033231 [MDTD] marine metagenome; seawater 262 357 + Asn GTT [ENA]
>SRA1000956 SRR001049.318969 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 1 94 + Asn GTT [SRA]
Identical group No.170924 (2 seq.)
>ENV08000922 ABML01176317 Marine metagenome ; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands) 100 23 - Asn GTT [ENA]
>SRA1000901 SRR001049.49057 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 100 23 - Asn GTT [SRA]
Identical group No.199224 (9 seq.)
>ENV08000918 ABML01161660 Marine metagenome ; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands) 6 82 + Asn GTT [ENA]
>WENV170186781 CEPA01083424 [CEPA] marine metagenome genome assembly TARA_052_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 752 676 - Asn GTT [ENA]
>WENV170208382 CEPU01274461 [CEPU] marine metagenome genome assembly TARA_041_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 124 48 - Asn GTT [ENA]
>WENV170365469 CETN01078125 [CETN] marine metagenome genome assembly TARA_122_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 33 109 + Asn GTT [ENA]
>WENV170365685 CETN01150994 [CETN] marine metagenome genome assembly TARA_122_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 966 890 - Asn GTT [ENA]
>WENV170391682 CEUA01303675 [CEUA] marine metagenome genome assembly TARA_132_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 203 279 + Asn GTT [ENA]
>WENV170832582 MDSZ01064999 [MDSZ] marine metagenome; seawater 374 298 - Asn GTT [ENA]
>WENV170934896 MDTG01246734 [MDTG] marine metagenome; seawater 509 585 + Asn GTT [ENA]
>SRA1000932 SRR001049.195936 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 6 82 + Asn GTT [SRA]
Identical group No.257702 (6 seq.)
>ENV08000931 ABML01291914 Marine metagenome ; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands) 12 85 + Asn GTT [ENA]
>SRA1000891 SRR001049.371 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 12 85 + Asn GTT [SRA]
>SRA1000892 SRR001049.1602 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 12 85 + Asn GTT [SRA]
>SRA1000893 SRR001049.2232 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 12 85 + Asn GTT [SRA]
>SRA1000927 SRR001049.173419 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 12 85 + Asn GTT [SRA]
>SRA1000928 SRR001049.180114 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 12 85 + Asn GTT [SRA]
Identical group No.372408 (4 seq.)
>ENV08000914 ABML01152891 Marine metagenome ; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands) 84 8 - Asn GTT [ENA]
>ENV08000923 ABML01181510 Marine metagenome ; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands) 83 8 - Asn GTT [ENA]
>SRA1000917 SRR001049.138836 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 83 8 - Asn GTT [SRA]
>SRA1000951 SRR001049.283690 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 84 8 - Asn GTT [SRA]
Identical group No.395764 (1 seq.)
>SRA1000915 SRR001049.133544 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 31 103 + Asn GTT [SRA]
Identical group No.420118 (19 seq.)
>WENV180398907 OBQB01026645 [OBQB] marine metagenome; ENVO.00002150 109 35 - Asn GTT [ENA]
>WENV170136309 CENV01021751 [CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 494 568 + Asn GTT [ENA]
>WENV170148669 CEOA01013305 [CEOA] marine metagenome genome assembly TARA_032_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 789 863 + Asn GTT [ENA]
>WENV170148809 CEOA01036274 [CEOA] marine metagenome genome assembly TARA_032_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 775 701 - Asn GTT [ENA]
>WENV170148947 CEOA01063177 [CEOA] marine metagenome genome assembly TARA_032_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1404 1478 + Asn GTT [ENA]
>WENV170155458 CEOG01034526 [CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1233 1159 - Asn GTT [ENA]
>WENV170192868 CEPG01023263 [CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 891 965 + Asn GTT [ENA]
>WENV170193445 CEPH01082825 [CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 4962 4888 - Asn GTT [ENA]
>WENV170208131 CEPU01161520 [CEPU] marine metagenome genome assembly TARA_041_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 78 152 + Asn GTT [ENA]
>WENV170221608 CEQB01055966 [CEQB] marine metagenome genome assembly TARA_052_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 134 60 - Asn GTT [ENA]
>WENV170410173 CEUJ01078570 [CEUJ] marine metagenome genome assembly TARA_125_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 16709 16635 - Asn GTT [ENA]
>WENV170436508 CEUT01060641 [CEUT] marine metagenome genome assembly TARA_125_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 408 334 - Asn GTT [ENA]
>WENV170511797 CEVZ01120696 [CEVZ] marine metagenome genome assembly TARA_041_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 258 332 + Asn GTT [ENA]
>WENV170594262 FUFK011254608 [FUFK] metagenome; unknown 171 245 + Asn GTT [ENA]
>SRA1000912 SRR001049.110062 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 30 101 + Asn GTT [SRA]
>SRA1000914 SRR001049.131381 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 30 101 + Asn GTT [SRA]
>SRA1000920 SRR001049.142583 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 30 101 + Asn GTT [SRA]
>SRA1000924 SRR001049.155461 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 30 101 + Asn GTT [SRA]
>SRA1000957 SRR001049.332785 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 32 103 + Asn GTT [SRA]
Identical group No.420514 (14 seq.)
>ENV08000885 ABML01024929 Marine metagenome ; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands) 91 17 - Asn GTT [ENA]
>ENV08000886 ABML01026315 Marine metagenome ; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands) 12 86 + Asn GTT [ENA]
>ENV08000888 ABML01028457 Marine metagenome ; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands) 90 16 - Asn GTT [ENA]
>ENV08000977 ABMN01139056 marine metagenome; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Fanning (Tabuaeran; Northern Line Islands) 78 4 - Asn GTT [ENA]
>WENV170164713 CEON01016540 [CEON] marine metagenome genome assembly TARA_034_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 732 806 + Asn GTT [ENA]
>WENV170198034 CEPK01185273 [CEPK] marine metagenome genome assembly TARA_042_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 159 85 - Asn GTT [ENA]
>WENV170593464 FUFK010886996 [FUFK] metagenome; unknown 54 128 + Asn GTT [ENA]
>WENV170595544 FUFK011843828 [FUFK] metagenome; unknown 53 127 + Asn GTT [ENA]
>SRA1000903 SRR001049.67996 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 90 16 - Asn GTT [SRA]
>SRA1000926 SRR001049.168946 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 12 86 + Asn GTT [SRA]
>SRA1000950 SRR001049.279022 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 91 17 - Asn GTT [SRA]
>SRA1000952 SRR001049.287012 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 91 17 - Asn GTT [SRA]
>SRA1000958 SRR001049.333312 Line Islands Corals, viral fraction from water of Palmyra (SRP000141) 12 86 + Asn GTT [SRA]
>SRA1001034 SRR001051.372599 Line Islands Corals viral fraction from water of Fanning (SRP000143) 78 4 - Asn GTT [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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