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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = CAC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3202 (1 seq.)
>A171006047
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
601098
601192
+
Val
CAC
-
¡û
Identical group No.244863 (1 seq.)
>A171006839
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
2004448
2004374
-
Val
CAC
-
¡û
Identical group No.256132 (3 seq.)
>A171004336
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
919468
919393
-
Val
CAC
-
¡û
>W1910760390
MNFA01000001
Nitrososphaerota
Thaumarchaeota archaeon 13_1_40CM_4_48_7 [MNFA]
1306
1231
-
Val
CAC
[ENA]
¡û
>W1910760417
MNFY01000219
Nitrososphaerota
Thaumarchaeota archaeon 13_1_40CM_3_50_5 [MNFY]
157
82
-
Val
CAC
[ENA]
¡û
Identical group No.259869 (1 seq.)
>A171004259
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
2025797
2025720
-
Val
CAC
-
¡û
Identical group No.261130 (2 seq.)
>A171007486
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
962883
962806
-
Val
CAC
-
¡û
>W1910285436
FRFC01000004
Nitrososphaerota
Candidatus Nitrosotalea sinensis Nd2 [FRFC]
147526
147600
+
Val
CAC
[ENA]
¡û
Identical group No.641980 (1 seq.)
>At0080
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
1103646
1103555
-
Val
CAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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