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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = CTG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268759 (1 seq.)
>At0061
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
372562
372666
+
Gln
CTG
[Ensembl]
¡û
Identical group No.526251 (4 seq.)
>A178000018
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
321890
321799
-
Gln
CTG
-
¡û
>A178000349
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
286948
286857
-
Gln
CTG
-
¡û
>A178000523
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
644381
644290
-
Gln
CTG
-
¡û
>A178000554
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1510205
1510293
+
Gln
CTG
-
¡û
Identical group No.585688 (2 seq.)
>A178000350
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
297523
297435
-
Gln
CTG
-
¡û
>A178000717
CP021324
Nitrososphaerota
Candidatus Nitrosomarinus catalina SPOT01 [CP021324]
1067643
1067555
-
Gln
CTG
-
¡û
Identical group No.704771 (7 seq.)
>A173000169
CP007026
Nitrososphaerota
Candidatus Nitrosopelagicus brevis CN25 [CP007026]
939857
939929
+
Gln
CTG
-
¡û
>W1630018158
LUOY01000291
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S19_B12N3 [LUOY]
7238
7166
-
Gln
CTG
[ENA]
¡û
>W1630018160
LUOZ01000041
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S25_B3 [LUOZ]
5881
5809
-
Gln
CTG
[ENA]
¡û
>W1630018171
LUPB01000004
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S31_B2 [LUPB]
8318
8246
-
Gln
CTG
[ENA]
¡û
>W1630018178
LUPC01000011
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S32_B2 [LUPC]
20639
20711
+
Gln
CTG
[ENA]
¡û
>W1630018184
LUPD01000091
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S37_B6 [LUPD]
7957
7885
-
Gln
CTG
[ENA]
¡û
>W1630018187
LUPE01000036
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S43_B1 [LUPE]
8849
8921
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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