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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = GCA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.549852 (3 seq.)
>A171006058
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
422086
422013
-
Cys
GCA
-
¡û
>W1910794331
MRWN01000282
Nitrososphaerota
Thaumarchaeota archaeon BIN5 [MRWN]
1114
1041
-
Cys
GCA
[ENA]
¡û
>W1610027678
AVSQ01000023
Nitrososphaerota
Candidatus Nitrosotenuis chungbukensis MY2 [AVSQ]
29823
29896
+
Cys
GCA
[ENA]
¡û
Identical group No.673288 (1 seq.)
>A178000690
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
1152291
1152197
-
Cys
GCA
-
¡û
Identical group No.734349 (1 seq.)
>A17A001176
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
1176144
1176234
+
Cys
GCA
-
¡û
Identical group No.734353 (1 seq.)
>A179000473
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
1176144
1176233
+
Cys
GCA
-
¡û
Identical group No.739650 (1 seq.)
>A178000654
CP012850
Nitrososphaerota
Candidatus Nitrosocosmicus oleophilus MY3 [CP012850]
3062454
3062542
+
Cys
GCA
-
¡û
Identical group No.751890 (2 seq.)
>A178000184
CP002408
Nitrososphaerota
Candidatus Nitrososphaera gargensis Ga9.2 [CP002408]
1830360
1830447
+
Cys
GCA
-
¡û
>A178000434
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
41090
41001
-
Cys
GCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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