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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CGC
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.499714 (9 seq.)
>W1711744490
MUHX01000010
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
58453
58528
+
Ala
CGC
[ENA]
¡û
>WENV180657867
OCVV010709861
[OCVV] gut metagenome; gut
314
389
+
Ala
CGC
[ENA]
¢þ
>WENV180657869
OCVV010709861
[OCVV] gut metagenome; gut
314
389
+
Ala
CGC
[ENA]
¢þ
>WENV181638883
OGNC01026554
[OGNC] metagenome; Human gut stool
279
204
-
Ala
CGC
[ENA]
¢þ
>WENV183419811
OMAZ01049276
[OMAZ] human gut metagenome; feces
485
560
+
Ala
CGC
[ENA]
¢þ
>WENV183484372
OMFO01026518
[OMFO] human gut metagenome; feces
137
62
-
Ala
CGC
[ENA]
¢þ
>WENV183763962
PPYE01311358
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
28756
28831
+
Ala
CGC
[ENA]
¢þ
>W10113009
ADFP01000008
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
67
142
+
Ala
CGC
[ENA]
¡û
>W11116236
ADFP01000008
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
67
142
+
Ala
CGC
[ENA]
¡û
Identical group No.516295 (10 seq.)
>WENV180789271
ODIS01387643
[ODIS] human metagenome; G_DNA_Supragingival plaque
66
141
+
Ala
CGC
[ENA]
¢þ
>WENV180797792
ODJB01125366
[ODJB] human metagenome; G_DNA_Supragingival plaque
424
349
-
Ala
CGC
[ENA]
¢þ
>WENV180809806
ODJK01050682
[ODJK] human metagenome; G_DNA_Subgingival plaque
110
185
+
Ala
CGC
[ENA]
¢þ
>WENV180945288
ODUC01104496
[ODUC] human metagenome; G_DNA_Supragingival plaque
175
250
+
Ala
CGC
[ENA]
¢þ
>WENV181051130
ODYD01202178
[ODYD] human metagenome; G_DNA_Supragingival plaque
134
209
+
Ala
CGC
[ENA]
¢þ
>WENV181076684
OEAP01010568
[OEAP] human metagenome; G_DNA_Supragingival plaque
3022
2947
-
Ala
CGC
[ENA]
¢þ
>WENV181080808
OEAS01084067
[OEAS] human metagenome; G_DNA_Supragingival plaque
104
29
-
Ala
CGC
[ENA]
¢þ
>WENV181091942
OEBC01151199
[OEBC] human metagenome; G_DNA_Supragingival plaque
306
381
+
Ala
CGC
[ENA]
¢þ
>WENV183715234
PDWI01229204
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
939
864
-
Ala
CGC
[ENA]
¢þ
>C161104039
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
1117009
1116934
-
Ala
CGC
-
¡û
Identical group No.554145 (3 seq.)
>W141146860
AWWC01000020
Synergistota
Jonquetella sp. BV3C21 [AWWC]
14743
14818
+
Ala
CGC
[ENA]
¡û
>W09132969
ACOO02000025
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
13925
14000
+
Ala
CGC
[ENA]
¡û
>W121017492
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
310486
310561
+
Ala
CGC
[ENA]
¡û
Identical group No.658520 (9 seq.)
>WENV170678343
LDZT01014019
[LDZT] terrestrial metagenome; oil reservoir sample SB1
40
114
+
Ala
CGC
[ENA]
¢þ
>WENV170678606
LDZU01003376
[LDZU] terrestrial metagenome; oil reservoir sample SB2
57
131
+
Ala
CGC
[ENA]
¢þ
>WENV170967224
MTKW01000525
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
122589
122663
+
Ala
CGC
[ENA]
¢þ
>WENV170972265
MTKX01025518
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
237
311
+
Ala
CGC
[ENA]
¢þ
>WENV170978115
MTKZ01041200
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
13730
13804
+
Ala
CGC
[ENA]
¢þ
>W1610613695
LGGE01000012
Synergistota
Synergistales bacterium 57_84 [LGGE]
40
114
+
Ala
CGC
[ENA]
¡û
>W1610614144
LGGV01000001
Synergistota
Synergistales bacterium 58_81 [LGGV]
57
131
+
Ala
CGC
[ENA]
¡û
>W1710734848
LGGE01000012
Synergistota
Synergistales bacterium 57_84 [LGGE]
40
114
+
Ala
CGC
[ENA]
¡û
>W1710735227
LGGV01000001
Synergistota
Synergistales bacterium 58_81 [LGGV]
57
131
+
Ala
CGC
[ENA]
¡û
Identical group No.673443 (2 seq.)
>C121008079
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
885636
885562
-
Ala
CGC
[Ensembl]
¡û
>W1710594053
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
201372
201446
+
Ala
CGC
[ENA]
¡û
Identical group No.674603 (26 seq.)
>W1711137626
LVBQ01000057
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
1483
1409
-
Ala
CGC
[ENA]
¡û
>W1712039380
NFJQ01000010
Synergistota
Cloacibacillus sp. An23 [NFJQ]
146164
146238
+
Ala
CGC
[ENA]
¡û
>C171050566
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1826943
1826869
-
Ala
CGC
-
¡û
>WENV181908675
OGYB01000277
[OGYB] human gut metagenome; faeces
4730
4656
-
Ala
CGC
[ENA]
¢þ
>WENV181910628
OGYC01024532
[OGYC] human gut metagenome; faeces
117
191
+
Ala
CGC
[ENA]
¢þ
>WENV181914579
OGYF01000478
[OGYF] human gut metagenome; faeces
4937
5011
+
Ala
CGC
[ENA]
¢þ
>WENV182005717
OHBE01013067
[OHBE] human gut metagenome; faeces
392
466
+
Ala
CGC
[ENA]
¢þ
>WENV182031225
OHCS01006036
[OHCS] human gut metagenome; feces
2746
2820
+
Ala
CGC
[ENA]
¢þ
>WENV182143500
OHKV01002349
[OHKV] human gut metagenome; feces
3061
2987
-
Ala
CGC
[ENA]
¢þ
>WENV182212767
OHQG01006607
[OHQG] human gut metagenome; feces
1820
1746
-
Ala
CGC
[ENA]
¢þ
>WENV182215884
OHQM01005647
[OHQM] human gut metagenome; feces
2896
2970
+
Ala
CGC
[ENA]
¢þ
>WENV182220976
OHQS01024422
[OHQS] human gut metagenome; feces
856
782
-
Ala
CGC
[ENA]
¢þ
>WENV182537611
OIXH01011377
[OIXH] human gut metagenome; faeces
1009
1083
+
Ala
CGC
[ENA]
¢þ
>WENV183039176
OLGB01004012
[OLGB] human gut metagenome; faeces
215
289
+
Ala
CGC
[ENA]
¢þ
>WENV183488841
OMFZ01002131
[OMFZ] human gut metagenome; feces
289
215
-
Ala
CGC
[ENA]
¢þ
>WENV183580177
OOCM01028024
[OOCM] human gut metagenome; human gut
72
146
+
Ala
CGC
[ENA]
¢þ
>WENV170685884
LFRM01113997
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
505
579
+
Ala
CGC
[ENA]
¢þ
>W141452030
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
412151
412225
+
Ala
CGC
[ENA]
¡û
>W141701206
JMKI01000036
Synergistota
Synergistes jonesii [JMKI]
85962
86036
+
Ala
CGC
[ENA]
¡û
>W121000488
ACUH01000051
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
41906
41980
+
Ala
CGC
[ENA]
¡û
>W1610948746
LVBQ01000057
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
1483
1409
-
Ala
CGC
[ENA]
¡û
>W1710629247
JPZQ01000040
Synergistota
Synergistes jonesii [JPZQ]
85063
85137
+
Ala
CGC
[ENA]
¡û
>W1710629291
JPZR01000030
Synergistota
Synergistes jonesii [JPZR]
85065
85139
+
Ala
CGC
[ENA]
¡û
>W1710629333
JPZS01000033
Synergistota
Synergistes jonesii [JPZS]
85063
85137
+
Ala
CGC
[ENA]
¡û
>W1710631843
JQEK01000045
Synergistota
Synergistes jonesii [JQEK]
85064
85138
+
Ala
CGC
[ENA]
¡û
>W1710631881
JQEL01000036
Synergistota
Synergistes jonesii [JQEL]
85064
85138
+
Ala
CGC
[ENA]
¡û
Identical group No.676119 (6 seq.)
>W1711629550
MPPC01000010
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
233722
233796
+
Ala
CGC
[ENA]
¡û
>W141278997
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1209411
1209485
+
Ala
CGC
[ENA]
¡û
>WENV170657118
JTFO01088202
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
55
129
+
Ala
CGC
[ENA]
¢þ
>WENV170685551
LFRM01097755
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
319
393
+
Ala
CGC
[ENA]
¢þ
>WENV170719194
LSQX01104951
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
273495
273569
+
Ala
CGC
[ENA]
¢þ
>C10100328
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
996396
996322
-
Ala
CGC
[Ensembl]
¡û
Identical group No.681850 (5 seq.)
>WENV183515350
OMKS01058415
[OMKS] sediment metagenome; hot spring sediment
191
117
-
Ala
CGC
[ENA]
¢þ
>WENV170676972
LDZS01003840
[LDZS] terrestrial metagenome; oil reservoir sample K3
7771
7697
-
Ala
CGC
[ENA]
¢þ
>C121005703
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1131342
1131268
-
Ala
CGC
[Ensembl]
¡û
>W1610613334
LGFS01000002
Synergistota
Thermovirga lienii [LGFS]
7771
7697
-
Ala
CGC
[ENA]
¡û
>W1710734541
LGFS01000002
Synergistota
Thermovirga lienii [LGFS]
7771
7697
-
Ala
CGC
[ENA]
¡û
Identical group No.683545 (11 seq.)
>WENV181409405
OGCI01000159
[OGCI] hot springs metagenome; Hot spring water
38998
38924
-
Ala
CGC
[ENA]
¢þ
>WENV170563197
CZCB01011742
[CZCB] anaerobic digester metagenome; anaerobic digester
2635
2709
+
Ala
CGC
[ENA]
¢þ
>WENV170676918
LDZS01003200
[LDZS] terrestrial metagenome; oil reservoir sample K3
21678
21604
-
Ala
CGC
[ENA]
¢þ
>W09110132
ABUW01000004
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
75641
75715
+
Ala
CGC
[ENA]
¡û
>W09126597
ACJX01000115
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
1425
1351
-
Ala
CGC
[ENA]
¡û
>C10112976
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
879262
879336
+
Ala
CGC
[Ensembl]
¡û
>W11138607
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
83000
83074
+
Ala
CGC
[ENA]
¡û
>W121031628
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
865473
865547
+
Ala
CGC
[ENA]
¡û
>W1610613286
LGFQ01000020
Synergistota
Synergistales bacterium 54_24 [LGFQ]
21678
21604
-
Ala
CGC
[ENA]
¡û
>W1710530830
FNPD01000003
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
176373
176299
-
Ala
CGC
[ENA]
¡û
>W1710734493
LGFQ01000020
Synergistota
Synergistales bacterium 54_24 [LGFQ]
21678
21604
-
Ala
CGC
[ENA]
¡û
Identical group No.684090 (6 seq.)
>WENV170677155
LDZT01003271
[LDZT] terrestrial metagenome; oil reservoir sample SB1
17567
17641
+
Ala
CGC
[ENA]
¢þ
>WENV170679044
LDZU01006790
[LDZU] terrestrial metagenome; oil reservoir sample SB2
7654
7728
+
Ala
CGC
[ENA]
¢þ
>W1610613616
LGGB01000023
Synergistota
Synergistales bacterium 53_16 [LGGB]
17567
17641
+
Ala
CGC
[ENA]
¡û
>W1610614491
LGHG01000041
Synergistota
Synergistales bacterium 54_9 [LGHG]
7654
7728
+
Ala
CGC
[ENA]
¡û
>W1710734788
LGGB01000023
Synergistota
Synergistales bacterium 53_16 [LGGB]
17567
17641
+
Ala
CGC
[ENA]
¡û
>W1710735472
LGHG01000041
Synergistota
Synergistales bacterium 54_9 [LGHG]
7654
7728
+
Ala
CGC
[ENA]
¡û
Identical group No.717775 (4 seq.)
>WENV183710576
PDWI01049562
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2055
1981
-
Ala
CGC
[ENA]
¢þ
>WENV183717197
PDWJ01000566
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
11742
11668
-
Ala
CGC
[ENA]
¢þ
>WENV183721171
PDWJ01057633
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
383
309
-
Ala
CGC
[ENA]
¢þ
>W09108911
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
122664
122738
+
Ala
CGC
[ENA]
¡û
Identical group No.744201 (2 seq.)
>WENV170656377
JTFO01011938
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
791
717
-
Ala
CGC
[ENA]
¢þ
>W1710608678
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
100983
100909
-
Ala
CGC
[ENA]
¡û
Identical group No.762363 (1 seq.)
>W141278979
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
826805
826731
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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