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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GAT
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302265 (4 seq.)
>W09126607
ACJX01000142
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
27452
27376
-
Ile
GAT
[ENA]
¡û
>C121008083
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
883871
883795
-
Ile
GAT
[Ensembl]
¡û
>W1710530814
FNPD01000001
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
297126
297202
+
Ile
GAT
[ENA]
¡û
>W1710594057
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
205245
205321
+
Ile
GAT
[ENA]
¡û
Identical group No.306787 (2 seq.)
>WENV170725125
LSQX01331033
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1211
1135
-
Ile
GAT
[ENA]
¢þ
>C10100308
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
796527
796603
+
Ile
GAT
[Ensembl]
¡û
Identical group No.307533 (1 seq.)
>W141701199
JMKI01000028
Synergistota
Synergistes jonesii [JMKI]
620
696
+
Ile
GAT
[ENA]
¡û
Identical group No.314439 (10 seq.)
>W1711744498
MUHX01000014
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
61426
61350
-
Ile
GAT
[ENA]
¡û
>WENV181865393
OGWU01023679
[OGWU] human gut metagenome; faeces
1128
1052
-
Ile
GAT
[ENA]
¢þ
>WENV181988960
OHAO01001757
[OHAO] human gut metagenome; faeces
12493
12569
+
Ile
GAT
[ENA]
¢þ
>WENV183419630
OMAZ01012602
[OMAZ] human gut metagenome; feces
556
632
+
Ile
GAT
[ENA]
¢þ
>WENV183484453
OMFO01054704
[OMFO] human gut metagenome; feces
271
195
-
Ile
GAT
[ENA]
¢þ
>WENV183763891
PPYE01311192
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3406
3482
+
Ile
GAT
[ENA]
¢þ
>W10113038
ADFP01000088
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
227
151
-
Ile
GAT
[ENA]
¡û
>W10113050
ADFP01000135
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
42646
42722
+
Ile
GAT
[ENA]
¡û
>W11116265
ADFP01000088
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
227
151
-
Ile
GAT
[ENA]
¡û
>W11116277
ADFP01000135
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
42646
42722
+
Ile
GAT
[ENA]
¡û
Identical group No.318591 (3 seq.)
>WENV170676945
LDZS01003294
[LDZS] terrestrial metagenome; oil reservoir sample K3
2285
2209
-
Ile
GAT
[ENA]
¢þ
>W1610613313
LGFQ01000114
Synergistota
Synergistales bacterium 54_24 [LGFQ]
2285
2209
-
Ile
GAT
[ENA]
¡û
>W1710734520
LGFQ01000114
Synergistota
Synergistales bacterium 54_24 [LGFQ]
2285
2209
-
Ile
GAT
[ENA]
¡û
Identical group No.352496 (1 seq.)
>W11138598
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
1394212
1394288
+
Ile
GAT
[ENA]
¡û
Identical group No.363250 (1 seq.)
>W09132945
ACOO02000004
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
221985
222061
+
Ile
GAT
[ENA]
¡û
Identical group No.382795 (3 seq.)
>C171050535
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1510020
1510096
+
Ile
GAT
-
¡û
>W141452024
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
103605
103681
+
Ile
GAT
[ENA]
¡û
>W121000467
ACUH01000032
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
342
418
+
Ile
GAT
[ENA]
¡û
Identical group No.406133 (2 seq.)
>WENV170656526
JTFO01021197
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
115
191
+
Ile
GAT
[ENA]
¢þ
>W1710608700
FXBB01000017
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
56519
56443
-
Ile
GAT
[ENA]
¡û
Identical group No.417201 (3 seq.)
>W09110152
ABUW01000006
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
48652
48728
+
Ile
GAT
[ENA]
¡û
>C10113012
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1104844
1104768
-
Ile
GAT
[Ensembl]
¡û
>W121031624
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
784608
784684
+
Ile
GAT
[ENA]
¡û
Identical group No.430985 (2 seq.)
>W141278966
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
679145
679221
+
Ile
GAT
[ENA]
¡û
>W141278972
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
1018566
1018490
-
Ile
GAT
[ENA]
¡û
Identical group No.440917 (1 seq.)
>C121005682
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
904350
904426
+
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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