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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GGA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9867 (1 seq.)
>W11138595
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
1244736
1244829
+
Ser
GGA
[ENA]
¡û
Identical group No.11700 (1 seq.)
>W141278975
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
977176
977083
-
Ser
GGA
[ENA]
¡û
Identical group No.16803 (2 seq.)
>W09126639
ACJX01000213
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
98084
97992
-
Ser
GGA
[ENA]
¡û
>W1710530824
FNPD01000002
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
101144
101052
-
Ser
GGA
[ENA]
¡û
Identical group No.79612 (3 seq.)
>W141146859
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
84751
84663
-
Ser
GGA
[ENA]
¡û
>W09132961
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
84985
84897
-
Ser
GGA
[ENA]
¡û
>W121017507
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
89725
89637
-
Ser
GGA
[ENA]
¡û
Identical group No.109006 (1 seq.)
>W1710608669
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
329528
329441
-
Ser
GGA
[ENA]
¡û
Identical group No.110704 (1 seq.)
>W1711744489
MUHX01000009
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
55764
55851
+
Ser
GGA
[ENA]
¡û
Identical group No.110762 (1 seq.)
>C121005701
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1243662
1243575
-
Ser
GGA
[Ensembl]
¡û
Identical group No.110876 (1 seq.)
>W141278994
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
962484
962571
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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