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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TCT
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279667 (18 seq.)
>WENV180096320
MTBK01123270
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
366
442
+
Arg
TCT
[ENA]
¢þ
>WENV181230114
OFEK01000298
[OFEK] activated sludge metagenome; Anaerobic digester
14272
14348
+
Arg
TCT
[ENA]
¢þ
>WENV183516425
OMKS01177328
[OMKS] sediment metagenome; hot spring sediment
401
325
-
Arg
TCT
[ENA]
¢þ
>WENV170677158
LDZT01003271
[LDZT] terrestrial metagenome; oil reservoir sample SB1
17871
17947
+
Arg
TCT
[ENA]
¢þ
>WENV170678346
LDZT01014019
[LDZT] terrestrial metagenome; oil reservoir sample SB1
348
424
+
Arg
TCT
[ENA]
¢þ
>WENV170678609
LDZU01003376
[LDZU] terrestrial metagenome; oil reservoir sample SB2
365
441
+
Arg
TCT
[ENA]
¢þ
>WENV170679047
LDZU01006790
[LDZU] terrestrial metagenome; oil reservoir sample SB2
7958
8034
+
Arg
TCT
[ENA]
¢þ
>WENV170967227
MTKW01000525
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
122896
122972
+
Arg
TCT
[ENA]
¢þ
>WENV170972268
MTKX01025518
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
544
620
+
Arg
TCT
[ENA]
¢þ
>WENV170978118
MTKZ01041200
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
14037
14113
+
Arg
TCT
[ENA]
¢þ
>W1610613619
LGGB01000023
Synergistota
Synergistales bacterium 53_16 [LGGB]
17871
17947
+
Arg
TCT
[ENA]
¡û
>W1610613698
LGGE01000012
Synergistota
Synergistales bacterium 57_84 [LGGE]
348
424
+
Arg
TCT
[ENA]
¡û
>W1610614147
LGGV01000001
Synergistota
Synergistales bacterium 58_81 [LGGV]
365
441
+
Arg
TCT
[ENA]
¡û
>W1610614494
LGHG01000041
Synergistota
Synergistales bacterium 54_9 [LGHG]
7958
8034
+
Arg
TCT
[ENA]
¡û
>W1710734791
LGGB01000023
Synergistota
Synergistales bacterium 53_16 [LGGB]
17871
17947
+
Arg
TCT
[ENA]
¡û
>W1710734851
LGGE01000012
Synergistota
Synergistales bacterium 57_84 [LGGE]
348
424
+
Arg
TCT
[ENA]
¡û
>W1710735230
LGGV01000001
Synergistota
Synergistales bacterium 58_81 [LGGV]
365
441
+
Arg
TCT
[ENA]
¡û
>W1710735475
LGHG01000041
Synergistota
Synergistales bacterium 54_9 [LGHG]
7958
8034
+
Arg
TCT
[ENA]
¡û
Identical group No.279965 (8 seq.)
>WENV170563809
CZCB01030560
[CZCB] anaerobic digester metagenome; anaerobic digester
3194
3118
-
Arg
TCT
[ENA]
¢þ
>WENV170684597
LFRM01047713
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
145
221
+
Arg
TCT
[ENA]
¢þ
>WENV170691137
LFRM01381674
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5554
5478
-
Arg
TCT
[ENA]
¢þ
>WENV170968856
MTKW01015695
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1950
2026
+
Arg
TCT
[ENA]
¢þ
>W09126600
ACJX01000115
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
986
910
-
Arg
TCT
[ENA]
¡û
>C121008082
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
884841
884765
-
Arg
TCT
[Ensembl]
¡û
>W1710530833
FNPD01000003
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
175932
175856
-
Arg
TCT
[ENA]
¡û
>W1710594056
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
204275
204351
+
Arg
TCT
[ENA]
¡û
Identical group No.284788 (10 seq.)
>W1712039381
NFJQ01000010
Synergistota
Cloacibacillus sp. An23 [NFJQ]
67747
67671
-
Arg
TCT
[ENA]
¡û
>WENV180224033
OBBI01027454
[OBBI] human gut metagenome; human gut
49
125
+
Arg
TCT
[ENA]
¢þ
>WENV180240576
OBDD01018894
[OBDD] human gut metagenome; human gut
343
267
-
Arg
TCT
[ENA]
¢þ
>WENV182688088
OJOA01060762
[OJOA] human gut metagenome; human gut
108
32
-
Arg
TCT
[ENA]
¢þ
>W141701219
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
18396
18320
-
Arg
TCT
[ENA]
¡û
>W1710629260
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
17566
17490
-
Arg
TCT
[ENA]
¡û
>W1710629301
JPZR01000046
Synergistota
Synergistes jonesii [JPZR]
17569
17493
-
Arg
TCT
[ENA]
¡û
>W1710629343
JPZS01000048
Synergistota
Synergistes jonesii [JPZS]
17566
17490
-
Arg
TCT
[ENA]
¡û
>W1710631829
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
17567
17491
-
Arg
TCT
[ENA]
¡û
>W1710631894
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
17567
17491
-
Arg
TCT
[ENA]
¡û
Identical group No.306791 (2 seq.)
>W1711629553
MPPC01000010
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
237261
237337
+
Arg
TCT
[ENA]
¡û
>C10100331
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
986631
986555
-
Arg
TCT
[Ensembl]
¡û
Identical group No.318588 (3 seq.)
>WENV170676921
LDZS01003200
[LDZS] terrestrial metagenome; oil reservoir sample K3
21404
21328
-
Arg
TCT
[ENA]
¢þ
>W1610613289
LGFQ01000020
Synergistota
Synergistales bacterium 54_24 [LGFQ]
21404
21328
-
Arg
TCT
[ENA]
¡û
>W1710734496
LGFQ01000020
Synergistota
Synergistales bacterium 54_24 [LGFQ]
21404
21328
-
Arg
TCT
[ENA]
¡û
Identical group No.318592 (4 seq.)
>WENV170676975
LDZS01003840
[LDZS] terrestrial metagenome; oil reservoir sample K3
7489
7413
-
Arg
TCT
[ENA]
¢þ
>C121005706
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1131060
1130984
-
Arg
TCT
[Ensembl]
¡û
>W1610613337
LGFS01000002
Synergistota
Thermovirga lienii [LGFS]
7489
7413
-
Arg
TCT
[ENA]
¡û
>W1710734544
LGFS01000002
Synergistota
Thermovirga lienii [LGFS]
7489
7413
-
Arg
TCT
[ENA]
¡û
Identical group No.330345 (4 seq.)
>WENV181908455
OGYB01000037
[OGYB] human gut metagenome; faeces
46144
46220
+
Arg
TCT
[ENA]
¢þ
>WENV182172334
OHMY01002713
[OHMY] human gut metagenome; feces
638
714
+
Arg
TCT
[ENA]
¢þ
>W141452044
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
518149
518073
-
Arg
TCT
[ENA]
¡û
>W121000490
ACUH01000051
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
92759
92835
+
Arg
TCT
[ENA]
¡û
Identical group No.342457 (11 seq.)
>WENV180731938
ODGW01041905
[ODGW] human metagenome; G_DNA_Supragingival plaque
380
304
-
Arg
TCT
[ENA]
¢þ
>WENV180751849
ODHS01207578
[ODHS] human metagenome; G_DNA_Supragingival plaque
157
233
+
Arg
TCT
[ENA]
¢þ
>WENV180797795
ODJB01125366
[ODJB] human metagenome; G_DNA_Supragingival plaque
149
73
-
Arg
TCT
[ENA]
¢þ
>WENV180809809
ODJK01050682
[ODJK] human metagenome; G_DNA_Subgingival plaque
385
461
+
Arg
TCT
[ENA]
¢þ
>WENV180945291
ODUC01104496
[ODUC] human metagenome; G_DNA_Supragingival plaque
450
526
+
Arg
TCT
[ENA]
¢þ
>WENV180982154
ODVE01174101
[ODVE] human metagenome; G_DNA_Supragingival plaque
61
137
+
Arg
TCT
[ENA]
¢þ
>WENV181050869
ODYD01078804
[ODYD] human metagenome; G_DNA_Supragingival plaque
380
304
-
Arg
TCT
[ENA]
¢þ
>WENV181076687
OEAP01010568
[OEAP] human metagenome; G_DNA_Supragingival plaque
2747
2671
-
Arg
TCT
[ENA]
¢þ
>WENV181081188
OEAS01144434
[OEAS] human metagenome; G_DNA_Supragingival plaque
430
354
-
Arg
TCT
[ENA]
¢þ
>WENV183715237
PDWI01229204
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
664
588
-
Arg
TCT
[ENA]
¢þ
>C161104042
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
1116736
1116660
-
Arg
TCT
-
¡û
Identical group No.352331 (4 seq.)
>W1711744493
MUHX01000010
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
58718
58794
+
Arg
TCT
[ENA]
¡û
>WENV183763965
PPYE01311358
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
29022
29098
+
Arg
TCT
[ENA]
¢þ
>W10113012
ADFP01000008
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
333
409
+
Arg
TCT
[ENA]
¡û
>W11116239
ADFP01000008
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
333
409
+
Arg
TCT
[ENA]
¡û
Identical group No.352498 (1 seq.)
>W11138610
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
83285
83361
+
Arg
TCT
[ENA]
¡û
Identical group No.363956 (3 seq.)
>W141146863
AWWC01000020
Synergistota
Jonquetella sp. BV3C21 [AWWC]
15017
15093
+
Arg
TCT
[ENA]
¡û
>W09132972
ACOO02000025
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
14199
14275
+
Arg
TCT
[ENA]
¡û
>W121017495
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
310760
310836
+
Arg
TCT
[ENA]
¡û
Identical group No.376716 (10 seq.)
>W1711137628
LVBQ01000072
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
80
4
-
Arg
TCT
[ENA]
¡û
>C171050544
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1887153
1887229
+
Arg
TCT
-
¡û
>WENV180274755
OBHE01033770
[OBHE] human gut metagenome; human gut
21
97
+
Arg
TCT
[ENA]
¢þ
>WENV180544557
OCIQ01033914
[OCIQ] human gut metagenome; human gut
366
290
-
Arg
TCT
[ENA]
¢þ
>WENV181312121
OFJB01045396
[OFJB] sludge metagenome; sludge
672
748
+
Arg
TCT
[ENA]
¢þ
>WENV181915882
OGYF01023162
[OGYF] human gut metagenome; faeces
580
504
-
Arg
TCT
[ENA]
¢þ
>WENV182031328
OHCS01010137
[OHCS] human gut metagenome; feces
463
387
-
Arg
TCT
[ENA]
¢þ
>WENV182212671
OHQG01003305
[OHQG] human gut metagenome; feces
463
387
-
Arg
TCT
[ENA]
¢þ
>WENV170656547
JTFO01024204
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
267
191
-
Arg
TCT
[ENA]
¢þ
>W1610948748
LVBQ01000072
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
80
4
-
Arg
TCT
[ENA]
¡û
Identical group No.406120 (3 seq.)
>WENV170656380
JTFO01011938
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
522
446
-
Arg
TCT
[ENA]
¢þ
>W09108914
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
123053
123129
+
Arg
TCT
[ENA]
¡û
>W1710608681
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
100714
100638
-
Arg
TCT
[ENA]
¡û
Identical group No.417199 (1 seq.)
>W121031631
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
865741
865817
+
Arg
TCT
[ENA]
¡û
Identical group No.424045 (3 seq.)
>WENV181409408
OGCI01000159
[OGCI] hot springs metagenome; Hot spring water
38726
38650
-
Arg
TCT
[ENA]
¢þ
>W09110135
ABUW01000004
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
75913
75989
+
Arg
TCT
[ENA]
¡û
>C10112979
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
879534
879610
+
Arg
TCT
[Ensembl]
¡û
Identical group No.430981 (1 seq.)
>W141278956
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
428126
428202
+
Arg
TCT
[ENA]
¡û
Identical group No.441661 (1 seq.)
>W141279000
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1222865
1222941
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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