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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TGG
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236091 (3 seq.)
>WENV170676919
LDZS01003200
[LDZS] terrestrial metagenome; oil reservoir sample K3
21592
21514
-
Pro
TGG
[ENA]
¢þ
>W1610613287
LGFQ01000020
Synergistota
Synergistales bacterium 54_24 [LGFQ]
21592
21514
-
Pro
TGG
[ENA]
¡û
>W1710734494
LGFQ01000020
Synergistota
Synergistales bacterium 54_24 [LGFQ]
21592
21514
-
Pro
TGG
[ENA]
¡û
Identical group No.244956 (2 seq.)
>C121008080
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
885549
885472
-
Pro
TGG
[Ensembl]
¡û
>W1710594054
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
201459
201536
+
Pro
TGG
[ENA]
¡û
Identical group No.245164 (2 seq.)
>W1712039385
NFJQ01000010
Synergistota
Cloacibacillus sp. An23 [NFJQ]
23744
23667
-
Pro
TGG
[ENA]
¡û
>WENV182686967
OJNZ01088042
[OJNZ] human gut metagenome; human gut
436
359
-
Pro
TGG
[ENA]
¢þ
Identical group No.245515 (35 seq.)
>W1711629551
MPPC01000010
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
233807
233884
+
Pro
TGG
[ENA]
¡û
>WENV180096736
MTBK01144849
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
75809
75886
+
Pro
TGG
[ENA]
¢þ
>WENV180809807
ODJK01050682
[ODJK] human metagenome; G_DNA_Subgingival plaque
194
271
+
Pro
TGG
[ENA]
¢þ
>WENV181230112
OFEK01000298
[OFEK] activated sludge metagenome; Anaerobic digester
14075
14152
+
Pro
TGG
[ENA]
¢þ
>W141146861
AWWC01000020
Synergistota
Jonquetella sp. BV3C21 [AWWC]
14830
14907
+
Pro
TGG
[ENA]
¡û
>W141278998
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1209505
1209582
+
Pro
TGG
[ENA]
¡û
>WENV183515215
OMKS01051190
[OMKS] sediment metagenome; hot spring sediment
76
-1
-
Pro
TGG
[ENA]
¢þ
>WENV183515351
OMKS01058415
[OMKS] sediment metagenome; hot spring sediment
76
-1
-
Pro
TGG
[ENA]
¢þ
>WENV183516423
OMKS01177328
[OMKS] sediment metagenome; hot spring sediment
589
512
-
Pro
TGG
[ENA]
¢þ
>WENV183710577
PDWI01049562
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1966
1889
-
Pro
TGG
[ENA]
¢þ
>WENV183721172
PDWJ01057633
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
294
217
-
Pro
TGG
[ENA]
¢þ
>WENV170656378
JTFO01011938
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
703
626
-
Pro
TGG
[ENA]
¢þ
>WENV170657119
JTFO01088202
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
140
217
+
Pro
TGG
[ENA]
¢þ
>WENV170676973
LDZS01003840
[LDZS] terrestrial metagenome; oil reservoir sample K3
7660
7583
-
Pro
TGG
[ENA]
¢þ
>WENV170677156
LDZT01003271
[LDZT] terrestrial metagenome; oil reservoir sample SB1
17683
17760
+
Pro
TGG
[ENA]
¢þ
>WENV170678344
LDZT01014019
[LDZT] terrestrial metagenome; oil reservoir sample SB1
151
228
+
Pro
TGG
[ENA]
¢þ
>WENV170678607
LDZU01003376
[LDZU] terrestrial metagenome; oil reservoir sample SB2
168
245
+
Pro
TGG
[ENA]
¢þ
>WENV170679045
LDZU01006790
[LDZU] terrestrial metagenome; oil reservoir sample SB2
7770
7847
+
Pro
TGG
[ENA]
¢þ
>WENV170974032
MTKY01053109
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1862
1939
+
Pro
TGG
[ENA]
¢þ
>W09108912
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
122876
122953
+
Pro
TGG
[ENA]
¡û
>W09132970
ACOO02000025
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
14012
14089
+
Pro
TGG
[ENA]
¡û
>C10100329
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
996311
996234
-
Pro
TGG
[Ensembl]
¡û
>C121005704
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1131231
1131154
-
Pro
TGG
[Ensembl]
¡û
>C161104040
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
1116925
1116848
-
Pro
TGG
-
¡û
>W121017493
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
310573
310650
+
Pro
TGG
[ENA]
¡û
>W1610613335
LGFS01000002
Synergistota
Thermovirga lienii [LGFS]
7660
7583
-
Pro
TGG
[ENA]
¡û
>W1610613617
LGGB01000023
Synergistota
Synergistales bacterium 53_16 [LGGB]
17683
17760
+
Pro
TGG
[ENA]
¡û
>W1610613696
LGGE01000012
Synergistota
Synergistales bacterium 57_84 [LGGE]
151
228
+
Pro
TGG
[ENA]
¡û
>W1610614145
LGGV01000001
Synergistota
Synergistales bacterium 58_81 [LGGV]
168
245
+
Pro
TGG
[ENA]
¡û
>W1610614492
LGHG01000041
Synergistota
Synergistales bacterium 54_9 [LGHG]
7770
7847
+
Pro
TGG
[ENA]
¡û
>W1710734542
LGFS01000002
Synergistota
Thermovirga lienii [LGFS]
7660
7583
-
Pro
TGG
[ENA]
¡û
>W1710734789
LGGB01000023
Synergistota
Synergistales bacterium 53_16 [LGGB]
17683
17760
+
Pro
TGG
[ENA]
¡û
>W1710734849
LGGE01000012
Synergistota
Synergistales bacterium 57_84 [LGGE]
151
228
+
Pro
TGG
[ENA]
¡û
>W1710735228
LGGV01000001
Synergistota
Synergistales bacterium 58_81 [LGGV]
168
245
+
Pro
TGG
[ENA]
¡û
>W1710735473
LGHG01000041
Synergistota
Synergistales bacterium 54_9 [LGHG]
7770
7847
+
Pro
TGG
[ENA]
¡û
Identical group No.247235 (5 seq.)
>WENV180346814
OBLN01316822
[OBLN] sediment metagenome; sediment
92
169
+
Pro
TGG
[ENA]
¢þ
>WENV170563198
CZCB01011742
[CZCB] anaerobic digester metagenome; anaerobic digester
2720
2797
+
Pro
TGG
[ENA]
¢þ
>WENV170724721
LSQX01316244
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
802
725
-
Pro
TGG
[ENA]
¢þ
>W09126598
ACJX01000115
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
1341
1264
-
Pro
TGG
[ENA]
¡û
>W1710530831
FNPD01000003
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
176288
176211
-
Pro
TGG
[ENA]
¡û
Identical group No.248827 (7 seq.)
>W1711744491
MUHX01000010
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
58542
58619
+
Pro
TGG
[ENA]
¡û
>WENV180657868
OCVV010709861
[OCVV] gut metagenome; gut
404
481
+
Pro
TGG
[ENA]
¢þ
>WENV180657870
OCVV010709861
[OCVV] gut metagenome; gut
404
481
+
Pro
TGG
[ENA]
¢þ
>WENV181638884
OGNC01026554
[OGNC] metagenome; Human gut stool
190
113
-
Pro
TGG
[ENA]
¢þ
>WENV183763963
PPYE01311358
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
28845
28922
+
Pro
TGG
[ENA]
¢þ
>W10113010
ADFP01000008
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
156
233
+
Pro
TGG
[ENA]
¡û
>W11116237
ADFP01000008
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
156
233
+
Pro
TGG
[ENA]
¡û
Identical group No.249335 (12 seq.)
>C171050567
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1819406
1819329
-
Pro
TGG
-
¡û
>WENV181728523
OGQA01085805
[OGQA] human gut metagenome; faeces
644
567
-
Pro
TGG
[ENA]
¢þ
>WENV181908673
OGYB01000277
[OGYB] human gut metagenome; faeces
8303
8380
+
Pro
TGG
[ENA]
¢þ
>WENV181914580
OGYF01000478
[OGYF] human gut metagenome; faeces
12474
12551
+
Pro
TGG
[ENA]
¢þ
>WENV181989863
OHAO01078965
[OHAO] human gut metagenome; faeces
51
128
+
Pro
TGG
[ENA]
¢þ
>WENV182005948
OHBE01036160
[OHBE] human gut metagenome; faeces
132
209
+
Pro
TGG
[ENA]
¢þ
>WENV182212941
OHQG01019749
[OHQG] human gut metagenome; feces
731
808
+
Pro
TGG
[ENA]
¢þ
>WENV182215807
OHQM01002845
[OHQM] human gut metagenome; feces
629
706
+
Pro
TGG
[ENA]
¢þ
>WENV183040243
OLGB01082451
[OLGB] human gut metagenome; faeces
572
649
+
Pro
TGG
[ENA]
¢þ
>WENV183419756
OMAZ01033453
[OMAZ] human gut metagenome; feces
409
332
-
Pro
TGG
[ENA]
¢þ
>W141452051
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
408578
408501
-
Pro
TGG
[ENA]
¡û
>W121000502
ACUH01000051
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
38333
38256
-
Pro
TGG
[ENA]
¡û
Identical group No.253208 (1 seq.)
>W11138608
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
83098
83175
+
Pro
TGG
[ENA]
¡û
Identical group No.256048 (4 seq.)
>W1711137608
LVBQ01000023
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
5644
5721
+
Pro
TGG
[ENA]
¡û
>WENV170688261
LFRM01236380
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
296
373
+
Pro
TGG
[ENA]
¢þ
>WENV170721022
LSQX01176108
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6132
6209
+
Pro
TGG
[ENA]
¢þ
>W1610948728
LVBQ01000023
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
5644
5721
+
Pro
TGG
[ENA]
¡û
Identical group No.264343 (1 seq.)
>W121031629
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
865557
865634
+
Pro
TGG
[ENA]
¡û
Identical group No.265581 (3 seq.)
>WENV181409406
OGCI01000159
[OGCI] hot springs metagenome; Hot spring water
38911
38834
-
Pro
TGG
[ENA]
¢þ
>W09110133
ABUW01000004
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
75728
75805
+
Pro
TGG
[ENA]
¡û
>C10112977
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
879349
879426
+
Pro
TGG
[Ensembl]
¡û
Identical group No.266496 (1 seq.)
>W1710608679
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
100894
100817
-
Pro
TGG
[ENA]
¡û
Identical group No.266683 (1 seq.)
>W141278980
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
826696
826619
-
Pro
TGG
[ENA]
¡û
Identical group No.307535 (6 seq.)
>W141701210
JMKI01000037
Synergistota
Synergistes jonesii [JMKI]
128636
128560
-
Pro
TGG
[ENA]
¡û
>W1710629252
JPZQ01000048
Synergistota
Synergistes jonesii [JPZQ]
29405
29329
-
Pro
TGG
[ENA]
¡û
>W1710629296
JPZR01000038
Synergistota
Synergistes jonesii [JPZR]
29413
29337
-
Pro
TGG
[ENA]
¡û
>W1710629338
JPZS01000041
Synergistota
Synergistes jonesii [JPZS]
29416
29340
-
Pro
TGG
[ENA]
¡û
>W1710631857
JQEK01000051
Synergistota
Synergistes jonesii [JQEK]
530
454
-
Pro
TGG
[ENA]
¡û
>W1710631886
JQEL01000043
Synergistota
Synergistes jonesii [JQEL]
29410
29334
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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