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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TTC
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.461196 (12 seq.)
>WENV180098788
MTBK01266929
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
392
317
-
Glu
TTC
[ENA]
¢þ
>WENV183516138
OMKS01135633
[OMKS] sediment metagenome; hot spring sediment
491
566
+
Glu
TTC
[ENA]
¢þ
>WENV170677166
LDZT01003279
[LDZT] terrestrial metagenome; oil reservoir sample SB1
10442
10517
+
Glu
TTC
[ENA]
¢þ
>WENV170679060
LDZU01006864
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1364
1439
+
Glu
TTC
[ENA]
¢þ
>WENV170967330
MTKW01000919
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2258
2183
-
Glu
TTC
[ENA]
¢þ
>WENV170972035
MTKX01018347
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
49190
49265
+
Glu
TTC
[ENA]
¢þ
>WENV170974573
MTKY01066083
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
13082
13157
+
Glu
TTC
[ENA]
¢þ
>WENV170976298
MTKZ01006422
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
54501
54426
-
Glu
TTC
[ENA]
¢þ
>W1610613627
LGGB01000031
Synergistota
Synergistales bacterium 53_16 [LGGB]
10442
10517
+
Glu
TTC
[ENA]
¡û
>W1610614507
LGHG01000115
Synergistota
Synergistales bacterium 54_9 [LGHG]
1364
1439
+
Glu
TTC
[ENA]
¡û
>W1710734799
LGGB01000031
Synergistota
Synergistales bacterium 53_16 [LGGB]
10442
10517
+
Glu
TTC
[ENA]
¡û
>W1710735488
LGHG01000115
Synergistota
Synergistales bacterium 54_9 [LGHG]
1364
1439
+
Glu
TTC
[ENA]
¡û
Identical group No.473791 (12 seq.)
>C171050559
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
2015844
2015769
-
Glu
TTC
-
¡û
>WENV181908729
OGYB01000435
[OGYB] human gut metagenome; faeces
5583
5508
-
Glu
TTC
[ENA]
¢þ
>WENV181914566
OGYF01000443
[OGYF] human gut metagenome; faeces
42882
42807
-
Glu
TTC
[ENA]
¢þ
>WENV182031366
OHCS01012525
[OHCS] human gut metagenome; feces
534
459
-
Glu
TTC
[ENA]
¢þ
>WENV182180765
OHNO01012273
[OHNO] human gut metagenome; feces
1402
1477
+
Glu
TTC
[ENA]
¢þ
>WENV182212967
OHQG01023391
[OHQG] human gut metagenome; feces
489
414
-
Glu
TTC
[ENA]
¢þ
>WENV182215827
OHQM01003687
[OHQM] human gut metagenome; feces
4242
4167
-
Glu
TTC
[ENA]
¢þ
>WENV182537864
OIXH01022119
[OIXH] human gut metagenome; faeces
1024
1099
+
Glu
TTC
[ENA]
¢þ
>WENV182883535
OKSB01014532
[OKSB] human gut metagenome; faeces
515
440
-
Glu
TTC
[ENA]
¢þ
>WENV183039693
OLGB01012493
[OLGB] human gut metagenome; faeces
204
279
+
Glu
TTC
[ENA]
¢þ
>W141452040
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
628737
628662
-
Glu
TTC
[ENA]
¡û
>W121000496
ACUH01000051
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
196074
195999
-
Glu
TTC
[ENA]
¡û
Identical group No.486066 (5 seq.)
>WENV170564065
CZCB01045918
[CZCB] anaerobic digester metagenome; anaerobic digester
166
91
-
Glu
TTC
[ENA]
¢þ
>W09126623
ACJX01000170
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
93535
93460
-
Glu
TTC
[ENA]
¡û
>C121008053
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
288344
288419
+
Glu
TTC
[Ensembl]
¡û
>W1710530843
FNPD01000010
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
486
561
+
Glu
TTC
[ENA]
¡û
>W1710594082
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
787591
787516
-
Glu
TTC
[ENA]
¡û
Identical group No.488002 (2 seq.)
>W1712039387
NFJQ01000011
Synergistota
Cloacibacillus sp. An23 [NFJQ]
58734
58809
+
Glu
TTC
[ENA]
¡û
>WENV181865519
OGWU01035688
[OGWU] human gut metagenome; faeces
546
621
+
Glu
TTC
[ENA]
¢þ
Identical group No.490525 (4 seq.)
>W1711629575
MPPC01000025
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
124395
124320
-
Glu
TTC
[ENA]
¡û
>W141278988
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
673261
673336
+
Glu
TTC
[ENA]
¡û
>WENV170719906
LSQX01133135
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
61856
61781
-
Glu
TTC
[ENA]
¢þ
>C10100319
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
1544106
1544031
-
Glu
TTC
[Ensembl]
¡û
Identical group No.491403 (6 seq.)
>W141701215
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
9545
9620
+
Glu
TTC
[ENA]
¡û
>W1710629256
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
8715
8790
+
Glu
TTC
[ENA]
¡û
>W1710629300
JPZR01000046
Synergistota
Synergistes jonesii [JPZR]
8717
8792
+
Glu
TTC
[ENA]
¡û
>W1710629342
JPZS01000048
Synergistota
Synergistes jonesii [JPZS]
8715
8790
+
Glu
TTC
[ENA]
¡û
>W1710631825
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
8715
8790
+
Glu
TTC
[ENA]
¡û
>W1710631890
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
8715
8790
+
Glu
TTC
[ENA]
¡û
Identical group No.504036 (4 seq.)
>WENV170676916
LDZS01003199
[LDZS] terrestrial metagenome; oil reservoir sample K3
1206
1281
+
Glu
TTC
[ENA]
¢þ
>W11138591
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
971477
971552
+
Glu
TTC
[ENA]
¡û
>W1610613284
LGFQ01000019
Synergistota
Synergistales bacterium 54_24 [LGFQ]
1206
1281
+
Glu
TTC
[ENA]
¡û
>W1710734491
LGFQ01000019
Synergistota
Synergistales bacterium 54_24 [LGFQ]
1206
1281
+
Glu
TTC
[ENA]
¡û
Identical group No.504092 (7 seq.)
>W141278953
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
157037
157112
+
Glu
TTC
[ENA]
¡û
>WENV170678359
LDZT01014042
[LDZT] terrestrial metagenome; oil reservoir sample SB1
7875
7950
+
Glu
TTC
[ENA]
¢þ
>WENV170678636
LDZU01003517
[LDZU] terrestrial metagenome; oil reservoir sample SB2
140
215
+
Glu
TTC
[ENA]
¢þ
>W1610613711
LGGE01000035
Synergistota
Synergistales bacterium 57_84 [LGGE]
7875
7950
+
Glu
TTC
[ENA]
¡û
>W1610614174
LGGV01000142
Synergistota
Synergistales bacterium 58_81 [LGGV]
140
215
+
Glu
TTC
[ENA]
¡û
>W1710734864
LGGE01000035
Synergistota
Synergistales bacterium 57_84 [LGGE]
7875
7950
+
Glu
TTC
[ENA]
¡û
>W1710735257
LGGV01000142
Synergistota
Synergistales bacterium 58_81 [LGGV]
140
215
+
Glu
TTC
[ENA]
¡û
Identical group No.538078 (1 seq.)
>C161104056
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
260308
260233
-
Glu
TTC
-
¡û
Identical group No.541208 (7 seq.)
>W1711744507
MUHX01000026
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
23286
23361
+
Glu
TTC
[ENA]
¡û
>WENV181638960
OGNC01044921
[OGNC] metagenome; Human gut stool
379
304
-
Glu
TTC
[ENA]
¢þ
>WENV181973387
OHAA01037263
[OHAA] human gut metagenome; faeces
11
86
+
Glu
TTC
[ENA]
¢þ
>WENV181988779
OHAO01000524
[OHAO] human gut metagenome; faeces
8550
8625
+
Glu
TTC
[ENA]
¢þ
>WENV183763934
PPYE01311247
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
37512
37587
+
Glu
TTC
[ENA]
¢þ
>W10113021
ADFP01000047
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
95691
95616
-
Glu
TTC
[ENA]
¡û
>W11116248
ADFP01000047
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
95691
95616
-
Glu
TTC
[ENA]
¡û
Identical group No.551485 (6 seq.)
>W1711137562
LVBO01000193
Synergistota
Synergistales bacterium Syner_01 [LVBO]
10352
10427
+
Glu
TTC
[ENA]
¡û
>W1711137595
LVBP01000232
Synergistota
Synergistales bacterium Syner_02 [LVBP]
173
248
+
Glu
TTC
[ENA]
¡û
>WENV170658299
JTFP01083302
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
149
74
-
Glu
TTC
[ENA]
¢þ
>WENV170686423
LFRM01143735
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
890
815
-
Glu
TTC
[ENA]
¢þ
>W1610948682
LVBO01000193
Synergistota
Synergistales bacterium Syner_01 [LVBO]
10352
10427
+
Glu
TTC
[ENA]
¡û
>W1610948715
LVBP01000232
Synergistota
Synergistales bacterium Syner_02 [LVBP]
173
248
+
Glu
TTC
[ENA]
¡û
Identical group No.553417 (3 seq.)
>W141146872
AWWC01000024
Synergistota
Jonquetella sp. BV3C21 [AWWC]
22070
22145
+
Glu
TTC
[ENA]
¡û
>W09132979
ACOO02000027
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
68344
68269
-
Glu
TTC
[ENA]
¡û
>W121017501
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
480930
480855
-
Glu
TTC
[ENA]
¡û
Identical group No.568337 (4 seq.)
>W1711137630
LVBQ01000074
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
249
174
-
Glu
TTC
[ENA]
¡û
>WENV181312248
OFJB01062648
[OFJB] sludge metagenome; sludge
130
55
-
Glu
TTC
[ENA]
¢þ
>WENV170978500
MTKZ01052005
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
223
148
-
Glu
TTC
[ENA]
¢þ
>W1610948750
LVBQ01000074
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
249
174
-
Glu
TTC
[ENA]
¡û
Identical group No.601770 (2 seq.)
>WENV170657139
JTFO01090814
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
440
365
-
Glu
TTC
[ENA]
¢þ
>W1710608698
FXBB01000014
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
30787
30862
+
Glu
TTC
[ENA]
¡û
Identical group No.614289 (4 seq.)
>WENV181409289
OGCI01000066
[OGCI] hot springs metagenome; Hot spring water
24784
24709
-
Glu
TTC
[ENA]
¢þ
>W09110122
ABUW01000002
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
230665
230740
+
Glu
TTC
[ENA]
¡û
>C10113006
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1353383
1353308
-
Glu
TTC
[Ensembl]
¡û
>W121031619
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
503252
503327
+
Glu
TTC
[ENA]
¡û
Identical group No.621940 (2 seq.)
>WENV183717986
PDWJ01002112
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1548
1473
-
Glu
TTC
[ENA]
¢þ
>W09108901
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
248312
248237
-
Glu
TTC
[ENA]
¡û
Identical group No.641544 (1 seq.)
>C121005677
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
579860
579935
+
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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