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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TTG
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.461240 (7 seq.)
>WENV170561653
CZCA01019156
[CZCA] anaerobic digester metagenome; anaerobic digester
105
30
-
Gln
TTG
[ENA]
¢þ
>WENV170562175
CZCB01001294
[CZCB] anaerobic digester metagenome; anaerobic digester
28460
28385
-
Gln
TTG
[ENA]
¢þ
>WENV170686049
LFRM01123492
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
19965
20040
+
Gln
TTG
[ENA]
¢þ
>WENV170721672
LSQX01199372
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
15886
15811
-
Gln
TTG
[ENA]
¢þ
>WENV170967491
MTKW01001644
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
12705
12630
-
Gln
TTG
[ENA]
¢þ
>C121008057
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
643303
643378
+
Gln
TTG
[Ensembl]
¡û
>W1710594086
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
428940
428865
-
Gln
TTG
[ENA]
¡û
Identical group No.473796 (13 seq.)
>C171050534
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1484756
1484831
+
Gln
TTG
-
¡û
>WENV181908714
OGYB01000377
[OGYB] human gut metagenome; faeces
8030
8105
+
Gln
TTG
[ENA]
¢þ
>WENV181914624
OGYF01000572
[OGYF] human gut metagenome; faeces
3796
3721
-
Gln
TTG
[ENA]
¢þ
>WENV182031164
OHCS01004131
[OHCS] human gut metagenome; feces
3798
3723
-
Gln
TTG
[ENA]
¢þ
>WENV182143883
OHKV01045618
[OHKV] human gut metagenome; feces
117
192
+
Gln
TTG
[ENA]
¢þ
>WENV182180840
OHNO01018654
[OHNO] human gut metagenome; feces
353
428
+
Gln
TTG
[ENA]
¢þ
>WENV182212978
OHQG01025917
[OHQG] human gut metagenome; feces
352
427
+
Gln
TTG
[ENA]
¢þ
>WENV182216017
OHQM01012250
[OHQM] human gut metagenome; feces
352
427
+
Gln
TTG
[ENA]
¢þ
>WENV182274950
OHUK01034533
[OHUK] human gut metagenome; feces
604
529
-
Gln
TTG
[ENA]
¢þ
>WENV182538161
OIXH01046376
[OIXH] human gut metagenome; faeces
786
711
-
Gln
TTG
[ENA]
¢þ
>WENV183038570
OLGB01000779
[OLGB] human gut metagenome; faeces
33442
33517
+
Gln
TTG
[ENA]
¢þ
>W141452023
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
78216
78291
+
Gln
TTG
[ENA]
¡û
>W121000466
ACUH01000031
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
8369
8444
+
Gln
TTG
[ENA]
¡û
Identical group No.487996 (1 seq.)
>W1712039352
NFJQ01000002
Synergistota
Cloacibacillus sp. An23 [NFJQ]
107329
107404
+
Gln
TTG
[ENA]
¡û
Identical group No.491407 (6 seq.)
>W141701227
JMKI01000053
Synergistota
Synergistes jonesii [JMKI]
24248
24173
-
Gln
TTG
[ENA]
¡û
>W1710629267
JPZQ01000061
Synergistota
Synergistes jonesii [JPZQ]
23369
23294
-
Gln
TTG
[ENA]
¡û
>W1710629311
JPZR01000053
Synergistota
Synergistes jonesii [JPZR]
23372
23297
-
Gln
TTG
[ENA]
¡û
>W1710629353
JPZS01000053
Synergistota
Synergistes jonesii [JPZS]
23369
23294
-
Gln
TTG
[ENA]
¡û
>W1710631817
JQEK01000004
Synergistota
Synergistes jonesii [JQEK]
23372
23297
-
Gln
TTG
[ENA]
¡û
>W1710631901
JQEL01000053
Synergistota
Synergistes jonesii [JQEL]
23369
23294
-
Gln
TTG
[ENA]
¡û
Identical group No.504041 (3 seq.)
>WENV170676938
LDZS01003275
[LDZS] terrestrial metagenome; oil reservoir sample K3
391
316
-
Gln
TTG
[ENA]
¢þ
>W1610613306
LGFQ01000095
Synergistota
Synergistales bacterium 54_24 [LGFQ]
391
316
-
Gln
TTG
[ENA]
¡û
>W1710734513
LGFQ01000095
Synergistota
Synergistales bacterium 54_24 [LGFQ]
391
316
-
Gln
TTG
[ENA]
¡û
Identical group No.574432 (2 seq.)
>W09126617
ACJX01000148
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
13618
13543
-
Gln
TTG
[ENA]
¡û
>W1710530811
FNPD01000001
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
241701
241776
+
Gln
TTG
[ENA]
¡û
Identical group No.676115 (4 seq.)
>W1711629578
MPPC01000027
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
28881
28807
-
Gln
TTG
[ENA]
¡û
>W141279021
JAFZ01000002
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
30335
30261
-
Gln
TTG
[ENA]
¡û
>WENV170722253
LSQX01222614
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
13536
13610
+
Gln
TTG
[ENA]
¢þ
>C10100307
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
766127
766201
+
Gln
TTG
[Ensembl]
¡û
Identical group No.684074 (8 seq.)
>WENV180346998
OBLN01489500
[OBLN] sediment metagenome; sediment
54
128
+
Gln
TTG
[ENA]
¢þ
>WENV181230182
OFEK01000393
[OFEK] activated sludge metagenome; Anaerobic digester
7972
7898
-
Gln
TTG
[ENA]
¢þ
>WENV170678366
LDZT01014059
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1280
1354
+
Gln
TTG
[ENA]
¢þ
>WENV170678622
LDZU01003389
[LDZU] terrestrial metagenome; oil reservoir sample SB2
4750
4676
-
Gln
TTG
[ENA]
¢þ
>W1610613718
LGGE01000052
Synergistota
Synergistales bacterium 57_84 [LGGE]
1280
1354
+
Gln
TTG
[ENA]
¡û
>W1610614160
LGGV01000014
Synergistota
Synergistales bacterium 58_81 [LGGV]
4750
4676
-
Gln
TTG
[ENA]
¡û
>W1710734871
LGGE01000052
Synergistota
Synergistales bacterium 57_84 [LGGE]
1280
1354
+
Gln
TTG
[ENA]
¡û
>W1710735243
LGGV01000014
Synergistota
Synergistales bacterium 58_81 [LGGV]
4750
4676
-
Gln
TTG
[ENA]
¡û
Identical group No.684091 (6 seq.)
>WENV170677174
LDZT01003335
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1341
1415
+
Gln
TTG
[ENA]
¢þ
>WENV170679062
LDZU01006870
[LDZU] terrestrial metagenome; oil reservoir sample SB2
624
698
+
Gln
TTG
[ENA]
¢þ
>W1610613635
LGGB01000087
Synergistota
Synergistales bacterium 53_16 [LGGB]
1341
1415
+
Gln
TTG
[ENA]
¡û
>W1610614509
LGHG01000121
Synergistota
Synergistales bacterium 54_9 [LGHG]
624
698
+
Gln
TTG
[ENA]
¡û
>W1710734807
LGGB01000087
Synergistota
Synergistales bacterium 53_16 [LGGB]
1341
1415
+
Gln
TTG
[ENA]
¡û
>W1710735490
LGHG01000121
Synergistota
Synergistales bacterium 54_9 [LGHG]
624
698
+
Gln
TTG
[ENA]
¡û
Identical group No.752696 (1 seq.)
>W121031623
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
757856
757930
+
Gln
TTG
[ENA]
¡û
Identical group No.757420 (3 seq.)
>WENV181409296
OGCI01000070
[OGCI] hot springs metagenome; Hot spring water
25556
25482
-
Gln
TTG
[ENA]
¢þ
>W09110151
ABUW01000006
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
21613
21687
+
Gln
TTG
[ENA]
¡û
>C10113011
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1131883
1131809
-
Gln
TTG
[Ensembl]
¡û
Identical group No.772076 (1 seq.)
>C121005681
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
802828
802902
+
Gln
TTG
[Ensembl]
¡û
Identical group No.795520 (4 seq.)
>W1711137565
LVBO01000268
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1082
1155
+
Gln
TTG
[ENA]
¡û
>WENV180346781
OBLN01292014
[OBLN] sediment metagenome; sediment
171
244
+
Gln
TTG
[ENA]
¢þ
>WENV170723062
LSQX01253550
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8069
7996
-
Gln
TTG
[ENA]
¢þ
>W1610948685
LVBO01000268
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1082
1155
+
Gln
TTG
[ENA]
¡û
Identical group No.795522 (8 seq.)
>W1711137622
LVBQ01000042
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
16596
16669
+
Gln
TTG
[ENA]
¡û
>WENV180346811
OBLN01315583
[OBLN] sediment metagenome; sediment
134
61
-
Gln
TTG
[ENA]
¢þ
>WENV181312322
OFJB01080783
[OFJB] sludge metagenome; sludge
173
246
+
Gln
TTG
[ENA]
¢þ
>WENV170688601
LFRM01252484
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
16398
16471
+
Gln
TTG
[ENA]
¢þ
>WENV170689859
LFRM01314682
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1474
1547
+
Gln
TTG
[ENA]
¢þ
>WENV170726589
LSQX01387126
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8524
8451
-
Gln
TTG
[ENA]
¢þ
>WENV170977688
MTKZ01029131
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3034
3107
+
Gln
TTG
[ENA]
¢þ
>W1610948742
LVBQ01000042
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
16596
16669
+
Gln
TTG
[ENA]
¡û
Identical group No.802594 (3 seq.)
>WENV180810256
ODJK01185618
[ODJK] human metagenome; G_DNA_Subgingival plaque
273
200
-
Gln
TTG
[ENA]
¢þ
>WENV181081328
OEAS01178722
[OEAS] human metagenome; G_DNA_Supragingival plaque
214
141
-
Gln
TTG
[ENA]
¢þ
>C161104058
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
48603
48530
-
Gln
TTG
-
¡û
Identical group No.803308 (8 seq.)
>W1711744516
MUHX01000035
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
21396
21323
-
Gln
TTG
[ENA]
¡û
>W141146856
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
129848
129921
+
Gln
TTG
[ENA]
¡û
>WENV181973389
OHAA01037420
[OHAA] human gut metagenome; faeces
575
648
+
Gln
TTG
[ENA]
¢þ
>WENV181989007
OHAO01002156
[OHAO] human gut metagenome; faeces
6038
6111
+
Gln
TTG
[ENA]
¢þ
>W09132958
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
130223
130296
+
Gln
TTG
[ENA]
¡û
>W10113042
ADFP01000102
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
7240
7313
+
Gln
TTG
[ENA]
¡û
>W11116269
ADFP01000102
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
7240
7313
+
Gln
TTG
[ENA]
¡û
>W121017485
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
134855
134928
+
Gln
TTG
[ENA]
¡û
Identical group No.803348 (1 seq.)
>W11138597
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
1367355
1367428
+
Gln
TTG
[ENA]
¡û
Identical group No.820571 (2 seq.)
>WENV170657004
JTFO01068824
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
124
197
+
Gln
TTG
[ENA]
¢þ
>W1710608709
FXBB01000019
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
45432
45505
+
Gln
TTG
[ENA]
¡û
Identical group No.826291 (2 seq.)
>W141278965
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
650328
650401
+
Gln
TTG
[ENA]
¡û
>W1610945977
LUYG01000253
Euryarchaeota
Methanosarcinales archaeon Methan_03 [LUYG]
1456
1383
-
Gln
TTG
[ENA]
¡û
Identical group No.826629 (2 seq.)
>W09108898
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
373524
373451
-
Gln
TTG
[ENA]
¡û
>W09108899
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
361441
361368
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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