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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TTT
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.461195 (9 seq.)
>WENV180346398
OBLN01085977
[OBLN] sediment metagenome; sediment
115
190
+
Lys
TTT
[ENA]
¢þ
>WENV181230006
OFEK01000176
[OFEK] activated sludge metagenome; Anaerobic digester
36075
36150
+
Lys
TTT
[ENA]
¢þ
>WENV170678635
LDZU01003517
[LDZU] terrestrial metagenome; oil reservoir sample SB2
48
123
+
Lys
TTT
[ENA]
¢þ
>WENV170967329
MTKW01000919
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2347
2272
-
Lys
TTT
[ENA]
¢þ
>WENV170972034
MTKX01018347
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
49101
49176
+
Lys
TTT
[ENA]
¢þ
>WENV170974572
MTKY01066083
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
12993
13068
+
Lys
TTT
[ENA]
¢þ
>WENV170976297
MTKZ01006422
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
54590
54515
-
Lys
TTT
[ENA]
¢þ
>W1610614173
LGGV01000142
Synergistota
Synergistales bacterium 58_81 [LGGV]
48
123
+
Lys
TTT
[ENA]
¡û
>W1710735256
LGGV01000142
Synergistota
Synergistales bacterium 58_81 [LGGV]
48
123
+
Lys
TTT
[ENA]
¡û
Identical group No.468292 (11 seq.)
>WENV180007188
FLRZ01191397
[FLRZ] metagenome; saliva
125
50
-
Lys
TTT
[ENA]
¢þ
>WENV180721990
ODGL01045527
[ODGL] human metagenome; G_DNA_Subgingival plaque
342
267
-
Lys
TTT
[ENA]
¢þ
>WENV180728541
ODGU01061028
[ODGU] human metagenome; G_DNA_Supragingival plaque
418
343
-
Lys
TTT
[ENA]
¢þ
>WENV180809802
ODJK01049051
[ODJK] human metagenome; G_DNA_Subgingival plaque
368
443
+
Lys
TTT
[ENA]
¢þ
>WENV180944486
ODUC01019409
[ODUC] human metagenome; G_DNA_Supragingival plaque
1523
1448
-
Lys
TTT
[ENA]
¢þ
>WENV180976942
ODUY01359526
[ODUY] human metagenome; G_DNA_Supragingival plaque
130
205
+
Lys
TTT
[ENA]
¢þ
>WENV180981643
ODVE01039250
[ODVE] human metagenome; G_DNA_Supragingival plaque
940
1015
+
Lys
TTT
[ENA]
¢þ
>WENV181076935
OEAP01018332
[OEAP] human metagenome; G_DNA_Supragingival plaque
478
553
+
Lys
TTT
[ENA]
¢þ
>WENV181081917
OEAS01501968
[OEAS] human metagenome; G_DNA_Supragingival plaque
205
130
-
Lys
TTT
[ENA]
¢þ
>WENV181091652
OEBC01065850
[OEBC] human metagenome; G_DNA_Supragingival plaque
711
636
-
Lys
TTT
[ENA]
¢þ
>C161104055
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
260390
260315
-
Lys
TTT
-
¡û
Identical group No.473790 (19 seq.)
>C171050558
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
2015927
2015852
-
Lys
TTT
-
¡û
>WENV181908728
OGYB01000435
[OGYB] human gut metagenome; faeces
5666
5591
-
Lys
TTT
[ENA]
¢þ
>WENV181914565
OGYF01000443
[OGYF] human gut metagenome; faeces
42965
42890
-
Lys
TTT
[ENA]
¢þ
>WENV182031365
OHCS01012525
[OHCS] human gut metagenome; feces
617
542
-
Lys
TTT
[ENA]
¢þ
>WENV182180764
OHNO01012273
[OHNO] human gut metagenome; feces
1319
1394
+
Lys
TTT
[ENA]
¢þ
>WENV182212966
OHQG01023391
[OHQG] human gut metagenome; feces
572
497
-
Lys
TTT
[ENA]
¢þ
>WENV182215826
OHQM01003687
[OHQM] human gut metagenome; feces
4325
4250
-
Lys
TTT
[ENA]
¢þ
>WENV182537863
OIXH01022119
[OIXH] human gut metagenome; faeces
941
1016
+
Lys
TTT
[ENA]
¢þ
>WENV182881985
OKSA01075688
[OKSA] human gut metagenome; faeces
7
82
+
Lys
TTT
[ENA]
¢þ
>WENV182883534
OKSB01014532
[OKSB] human gut metagenome; faeces
598
523
-
Lys
TTT
[ENA]
¢þ
>WENV183039692
OLGB01012493
[OLGB] human gut metagenome; faeces
121
196
+
Lys
TTT
[ENA]
¢þ
>W141452039
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
628820
628745
-
Lys
TTT
[ENA]
¡û
>W141701214
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
9460
9535
+
Lys
TTT
[ENA]
¡û
>W121000495
ACUH01000051
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
196157
196082
-
Lys
TTT
[ENA]
¡û
>W1710629255
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
8630
8705
+
Lys
TTT
[ENA]
¡û
>W1710629299
JPZR01000046
Synergistota
Synergistes jonesii [JPZR]
8632
8707
+
Lys
TTT
[ENA]
¡û
>W1710629341
JPZS01000048
Synergistota
Synergistes jonesii [JPZS]
8630
8705
+
Lys
TTT
[ENA]
¡û
>W1710631824
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
8630
8705
+
Lys
TTT
[ENA]
¡û
>W1710631889
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
8630
8705
+
Lys
TTT
[ENA]
¡û
Identical group No.486065 (4 seq.)
>W09126622
ACJX01000170
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
93639
93564
-
Lys
TTT
[ENA]
¡û
>C121008052
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
288249
288324
+
Lys
TTT
[Ensembl]
¡û
>W1710530842
FNPD01000010
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
382
457
+
Lys
TTT
[ENA]
¡û
>W1710594081
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
787686
787611
-
Lys
TTT
[ENA]
¡û
Identical group No.488001 (1 seq.)
>W1712039386
NFJQ01000011
Synergistota
Cloacibacillus sp. An23 [NFJQ]
58651
58726
+
Lys
TTT
[ENA]
¡û
Identical group No.490524 (2 seq.)
>WENV170719905
LSQX01133135
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
61936
61861
-
Lys
TTT
[ENA]
¢þ
>C10100318
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
1544186
1544111
-
Lys
TTT
[Ensembl]
¡û
Identical group No.500647 (7 seq.)
>WENV183516137
OMKS01135633
[OMKS] sediment metagenome; hot spring sediment
399
474
+
Lys
TTT
[ENA]
¢þ
>WENV170677165
LDZT01003279
[LDZT] terrestrial metagenome; oil reservoir sample SB1
10350
10425
+
Lys
TTT
[ENA]
¢þ
>WENV170679059
LDZU01006864
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1272
1347
+
Lys
TTT
[ENA]
¢þ
>W1610613626
LGGB01000031
Synergistota
Synergistales bacterium 53_16 [LGGB]
10350
10425
+
Lys
TTT
[ENA]
¡û
>W1610614506
LGHG01000115
Synergistota
Synergistales bacterium 54_9 [LGHG]
1272
1347
+
Lys
TTT
[ENA]
¡û
>W1710734798
LGGB01000031
Synergistota
Synergistales bacterium 53_16 [LGGB]
10350
10425
+
Lys
TTT
[ENA]
¡û
>W1710735487
LGHG01000115
Synergistota
Synergistales bacterium 54_9 [LGHG]
1272
1347
+
Lys
TTT
[ENA]
¡û
Identical group No.504039 (3 seq.)
>WENV170676926
LDZS01003204
[LDZS] terrestrial metagenome; oil reservoir sample K3
9700
9625
-
Lys
TTT
[ENA]
¢þ
>W1610613294
LGFQ01000024
Synergistota
Synergistales bacterium 54_24 [LGFQ]
9700
9625
-
Lys
TTT
[ENA]
¡û
>W1710734501
LGFQ01000024
Synergistota
Synergistales bacterium 54_24 [LGFQ]
9700
9625
-
Lys
TTT
[ENA]
¡û
Identical group No.539337 (1 seq.)
>W1711629574
MPPC01000025
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
124475
124400
-
Lys
TTT
[ENA]
¡û
Identical group No.541207 (6 seq.)
>W1711744506
MUHX01000026
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
23203
23278
+
Lys
TTT
[ENA]
¡û
>WENV181638959
OGNC01044921
[OGNC] metagenome; Human gut stool
462
387
-
Lys
TTT
[ENA]
¢þ
>WENV181988778
OHAO01000524
[OHAO] human gut metagenome; faeces
8467
8542
+
Lys
TTT
[ENA]
¢þ
>WENV183763933
PPYE01311247
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
37429
37504
+
Lys
TTT
[ENA]
¢þ
>W10113020
ADFP01000047
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
95774
95699
-
Lys
TTT
[ENA]
¡û
>W11116247
ADFP01000047
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
95774
95699
-
Lys
TTT
[ENA]
¡û
Identical group No.541236 (1 seq.)
>W11300942
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
971388
971463
+
Lys
TTT
[ENA]
¡û
Identical group No.551484 (5 seq.)
>W1711137561
LVBO01000193
Synergistota
Synergistales bacterium Syner_01 [LVBO]
10262
10337
+
Lys
TTT
[ENA]
¡û
>W1711137594
LVBP01000232
Synergistota
Synergistales bacterium Syner_02 [LVBP]
90
165
+
Lys
TTT
[ENA]
¡û
>WENV170658298
JTFP01083302
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
232
157
-
Lys
TTT
[ENA]
¢þ
>W1610948681
LVBO01000193
Synergistota
Synergistales bacterium Syner_01 [LVBO]
10262
10337
+
Lys
TTT
[ENA]
¡û
>W1610948714
LVBP01000232
Synergistota
Synergistales bacterium Syner_02 [LVBP]
90
165
+
Lys
TTT
[ENA]
¡û
Identical group No.553410 (3 seq.)
>W141146871
AWWC01000024
Synergistota
Jonquetella sp. BV3C21 [AWWC]
21992
22067
+
Lys
TTT
[ENA]
¡û
>W09132978
ACOO02000027
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
68422
68347
-
Lys
TTT
[ENA]
¡û
>W121017500
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
481008
480933
-
Lys
TTT
[ENA]
¡û
Identical group No.574071 (2 seq.)
>W1630018728
LVBQ01000074
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
331
256
-
Lys
TTT
[ENA]
¡û
>W1730021959
LVBQ01000074
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
331
256
-
Lys
TTT
[ENA]
¡û
Identical group No.601769 (3 seq.)
>WENV183717985
PDWJ01002112
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1627
1552
-
Lys
TTT
[ENA]
¢þ
>WENV170657138
JTFO01090814
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
520
445
-
Lys
TTT
[ENA]
¢þ
>W1710608697
FXBB01000014
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
30707
30782
+
Lys
TTT
[ENA]
¡û
Identical group No.614288 (4 seq.)
>WENV181409288
OGCI01000066
[OGCI] hot springs metagenome; Hot spring water
24872
24797
-
Lys
TTT
[ENA]
¢þ
>W09110121
ABUW01000002
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
230577
230652
+
Lys
TTT
[ENA]
¡û
>C10113005
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1353471
1353396
-
Lys
TTT
[Ensembl]
¡û
>W121031618
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
503107
503182
+
Lys
TTT
[ENA]
¡û
Identical group No.621932 (1 seq.)
>W09108900
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
248391
248316
-
Lys
TTT
[ENA]
¡û
Identical group No.629966 (1 seq.)
>W141278952
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
156956
157031
+
Lys
TTT
[ENA]
¡û
Identical group No.641546 (1 seq.)
>C121005676
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
579765
579840
+
Lys
TTT
[Ensembl]
¡û
Identical group No.642157 (1 seq.)
>W141278987
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
673181
673256
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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