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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Anticodon = CAA
HIT:
25 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113242 (11 seq.)
>W1711421887
MIAG01000002
Bacteroidota
Sphingobacteriia bacterium RIFOXYC2_FULL_35_18 [MIAG]
336168
336254
+
Leu
CAA
[ENA]
¡û
>W1711421914
MIAH01000002
Bacteroidota
Sphingobacteriia bacterium RIFOXYD2_FULL_35_12 [MIAH]
95
9
-
Leu
CAA
[ENA]
¡û
>WENV181401672
OFTX01002397
[OFTX] sludge metagenome; sludge
2776
2692
-
Leu
CAA
[ENA]
¢þ
>WENV170961506
MLJW01000098
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
26513
26427
-
Leu
CAA
[ENA]
¢þ
>SRA1003551
SRR002327.21762
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
27
111
+
Leu
CAA
[SRA]
>W1810239575
PPSL01000005
Bacteroidota
Flavipsychrobacter stenotrophus RB1R16 [PPSL]
10444
10528
+
Leu
CAA
[ENA]
¡û
>W1810682125
QKTW01000017
Bacteroidota
Taibaiella soli R1-15 [QKTW]
164969
164885
-
Leu
CAA
[ENA]
¡û
>W1510019464
BBWV01000003
Bacteroidota
Flavihumibacter petaseus NBRC 106054 [BBWV]
934359
934273
-
Leu
CAA
[ENA]
¡û
>W1511300702
JPHF01000002
Bacteroidota
Flavihumibacter sp. ZG627 [JPHF]
767927
768013
+
Leu
CAA
[ENA]
¡û
>W1511387765
JSVC01000009
Bacteroidota
Flavihumibacter solisilvae 3·î3Æü [JSVC]
44311
44395
+
Leu
CAA
[ENA]
¡û
>W1710544821
FOBB01000005
Bacteroidota
Chitinophaga rupis [FOBB]
84561
84645
+
Leu
CAA
[ENA]
¡û
Identical group No.115871 (8 seq.)
>WENV181377828
OFRA01036005
[OFRA] wastewater metagenome; Lake Maggiore Verbania
242
158
-
Leu
CAA
[ENA]
¢þ
>SRA1003404
SRR002326.440401
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
107
21
-
Leu
CAA
[SRA]
>SRA1003461
SRR002326.480277
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
138
224
+
Leu
CAA
[SRA]
>SRA1003474
SRR002326.489886
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
149
233
+
Leu
CAA
[SRA]
>SRA1003924
SRR002328.39757
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
151
237
+
Leu
CAA
[SRA]
>SRA1004136
SRR002328.166533
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
147
231
+
Leu
CAA
[SRA]
>SRA1004163
SRR002328.178206
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
224
140
-
Leu
CAA
[SRA]
>SRA1004172
SRR002328.181759
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
152
238
+
Leu
CAA
[SRA]
Identical group No.123075 (2 seq.)
>SRA1003409
SRR002326.449027
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
25
110
+
Leu
CAA
[SRA]
>SRA1004275
SRR002328.241938
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
111
27
-
Leu
CAA
[SRA]
Identical group No.123077 (1 seq.)
>SRA1003426
SRR002326.457099
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
26
112
+
Leu
CAA
[SRA]
Identical group No.129522 (1 seq.)
>SRA1003664
SRR002327.104519
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
28
112
+
Leu
CAA
[SRA]
Identical group No.129525 (1 seq.)
>SRA1003856
SRR002327.236809
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
89
3
-
Leu
CAA
[SRA]
Identical group No.160423 (1 seq.)
>SRA1002828
SRR002326.40852
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
164
249
+
Leu
CAA
[SRA]
Identical group No.160424 (6 seq.)
>W1710860339
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
2802502
2802417
-
Leu
CAA
[ENA]
¡û
>WENV180016692
FSVT01000623
[FSVT] metagenome; soil
1903
1820
-
Leu
CAA
[ENA]
¢þ
>WENV180017379
FSWU01000431
[FSWU] metagenome; soil
17232
17315
+
Leu
CAA
[ENA]
¢þ
>SRA1002891
SRR002326.79146
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
157
72
-
Leu
CAA
[SRA]
>SRA1003385
SRR002326.429462
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
141
56
-
Leu
CAA
[SRA]
>W1610722685
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
2802502
2802417
-
Leu
CAA
[ENA]
¡û
Identical group No.180404 (15 seq.)
>W1710861747
LMDW01000001
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
470533
470449
-
Leu
CAA
[ENA]
¡û
>C017344
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
3934264
3934348
+
Leu
CAA
[Ensembl]
¡û
>C08007658
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
3934264
3934348
+
Leu
CAA
[Ensembl]
¡û
>W141265970
CCJP01000005
Betaproteobacteria
Polaromonas sp. CG9_12 CJ2 [CCJP]
894598
894682
+
Leu
CAA
[ENA]
¡û
>WENV183621157
OOFT01012111
[OOFT] marine metagenome; sea ice
35
119
+
Leu
CAA
[ENA]
¢þ
>W141565111
JIBH01000001
Betaproteobacteria
Polaromonas sp. EUR3 1.2.1 [JIBH]
2782261
2782345
+
Leu
CAA
[ENA]
¡û
>W09101637
AAFQ02000012
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
124024
123940
-
Leu
CAA
[ENA]
¡û
>W141695469
JMDZ01000005
Betaproteobacteria
Polaromonas glacialis [JMDZ]
406981
407065
+
Leu
CAA
[ENA]
¡û
>W141695472
JMDZ01000006
Betaproteobacteria
Polaromonas glacialis [JMDZ]
1093
1177
+
Leu
CAA
[ENA]
¡û
>W1910699883
MERZ01000186
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 [MERZ]
950
866
-
Leu
CAA
[ENA]
¡û
>W1910859541
NBZW01000008
Betaproteobacteria
Polaromonas sp. AET17H-212 [NBZW]
63690
63606
-
Leu
CAA
[ENA]
¡û
>SRA1002973
SRR002326.130816
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
103
19
-
Leu
CAA
[SRA]
>SRA1003581
SRR002327.44339
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
109
193
+
Leu
CAA
[SRA]
>WENV058177
AACY023320136
Marine microbial communities from Global Ocean Sampling (GOS)
168
82
-
Leu
CAA
[ENA]
>W1610724093
LMDW01000001
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
470533
470449
-
Leu
CAA
[ENA]
¡û
Identical group No.186266 (20 seq.)
>W1711229606
LXYP01000003
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
207904
207988
+
Leu
CAA
[ENA]
¡û
>W1712105789
NISJ01000011
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
220
136
-
Leu
CAA
[ENA]
¡û
>W1712105830
NISK01000003
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
763734
763818
+
Leu
CAA
[ENA]
¡û
>WENV182568050
OJEP01020344
[OJEP] seawater metagenome; Sea water
438
522
+
Leu
CAA
[ENA]
¢þ
>WENV182585824
OJHI01018647
[OJHI] seawater metagenome; Sea water
508
424
-
Leu
CAA
[ENA]
¢þ
>WENV183673550
ORJL011290369
[ORJL] groundwater metagenome; groundwater
1620
1536
-
Leu
CAA
[ENA]
¢þ
>WENV183688836
ORMF011352132
[ORMF] groundwater metagenome; groundwater
464
380
-
Leu
CAA
[ENA]
¢þ
>WENV183724655
PJQE01041059
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
328
412
+
Leu
CAA
[ENA]
¢þ
>WENV183747902
PPFU01002416
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1154
1070
-
Leu
CAA
[ENA]
¢þ
>WENV170555552
CXWL01001042
[CXWL] groundwater metagenome; biofilm material
13263
13347
+
Leu
CAA
[ENA]
¢þ
>WENV170578034
FSSH01006901
[FSSH] freshwater metagenome; drinking water
6535
6451
-
Leu
CAA
[ENA]
¢þ
>WENV170668192
LADL02001758
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
3219
3303
+
Leu
CAA
[ENA]
¢þ
>WENV170668207
LADL02001855
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
9724
9808
+
Leu
CAA
[ENA]
¢þ
>W1910744329
MIAL01000010
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
35029
35113
+
Leu
CAA
[ENA]
¡û
>SRA1002822
SRR002326.37204
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
103
187
+
Leu
CAA
[SRA]
>SRA1002921
SRR002326.102237
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
116
32
-
Leu
CAA
[SRA]
>SRA1003282
SRR002326.365005
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
80
164
+
Leu
CAA
[SRA]
>C161043649
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
1468737
1468821
+
Leu
CAA
[Ensembl]
¡û
>W121084339
AKIB01000073
Alphaproteobacteria
Sphingobium xenophagum QYY [AKIB]
144
228
+
Leu
CAA
[ENA]
¡û
>W1611013476
LXYP01000003
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
207904
207988
+
Leu
CAA
[ENA]
¡û
Identical group No.187754 (3 seq.)
>SRA1003800
SRR002327.190086
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
65
149
+
Leu
CAA
[SRA]
>SRA1004190
SRR002328.191201
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
154
238
+
Leu
CAA
[SRA]
>W1511432408
JUGM01000017
Betaproteobacteria
Methylibium sp. CF059 [JUGM]
14416
14332
-
Leu
CAA
[ENA]
¡û
Identical group No.190261 (1 seq.)
>SRA1002934
SRR002326.108314
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
102
18
-
Leu
CAA
[SRA]
Identical group No.190267 (1 seq.)
>SRA1003258
SRR002326.346142
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
132
48
-
Leu
CAA
[SRA]
Identical group No.190270 (1 seq.)
>SRA1003362
SRR002326.412453
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
146
62
-
Leu
CAA
[SRA]
Identical group No.190271 (2 seq.)
>W1911647486
QAJN01000011
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
51104
51188
+
Leu
CAA
[ENA]
¡û
>SRA1003378
SRR002326.423818
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
99
15
-
Leu
CAA
[SRA]
Identical group No.196037 (1 seq.)
>SRA1003541
SRR002327.12242
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
105
189
+
Leu
CAA
[SRA]
Identical group No.205136 (2 seq.)
>WENV183749507
PPFU01177702
[PPFU] hypolithon metagenome; Antarctic Hypolithon
971
887
-
Leu
CAA
[ENA]
¢þ
>SRA1003922
SRR002328.37308
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
44
128
+
Leu
CAA
[SRA]
Identical group No.205137 (2 seq.)
>SRA1003925
SRR002328.39907
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
139
223
+
Leu
CAA
[SRA]
>SRA1004080
SRR002328.136666
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
139
223
+
Leu
CAA
[SRA]
Identical group No.205140 (1 seq.)
>SRA1004111
SRR002328.153310
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
103
19
-
Leu
CAA
[SRA]
Identical group No.220689 (1 seq.)
>SRA1003360
SRR002326.411503
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
55
136
+
Leu
CAA
[SRA]
Identical group No.222296 (2 seq.)
>SRA1003627
SRR002327.73282
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
199
116
-
Leu
CAA
[SRA]
>SRA1003666
SRR002327.106293
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
193
110
-
Leu
CAA
[SRA]
Identical group No.222304 (3 seq.)
>SRA1003926
SRR002328.40641
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
116
33
-
Leu
CAA
[SRA]
>W1610614654
LGIC01000006
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
846
763
-
Leu
CAA
[ENA]
¡û
>W1710735788
LGIC01000006
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
846
763
-
Leu
CAA
[ENA]
¡û
Identical group No.231224 (1 seq.)
>SRA1003972
SRR002328.66704
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
103
185
+
Leu
CAA
[SRA]
Identical group No.233130 (1 seq.)
>SRA1004023
SRR002328.99967
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
120
41
-
Leu
CAA
[SRA]
Identical group No.321237 (1 seq.)
>SRA1003217
SRR002326.312723
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
16
92
+
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK