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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = TAA
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91060 (5 seq.)
>A171003620
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
639409
639493
+
Leu
TAA
-
¡û
>A171006624
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1503853
1503937
+
Leu
TAA
-
¡û
>W141000085
AADL01001513
Unclassified
mine drainage metagenome Group III [AADL]
2916
2830
-
Leu
TAA
[ENA]
¡û
>W1610000060
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
176567
176651
+
Leu
TAA
[ENA]
¡û
>WENV077093
AADL01001513
Acid Mine Drainage microbial communities from Richmond mine
2916
2827
-
Leu
TAA
[ENA]
Identical group No.91061 (5 seq.)
>A171007731
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
616186
616270
+
Leu
TAA
-
¡û
>A171007768
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
606354
606438
+
Leu
TAA
-
¡û
>W141000102
AADL01001624
Unclassified
mine drainage metagenome Group III [AADL]
857
941
+
Leu
TAA
[ENA]
¡û
>ENV09002259
ACXJ01012236
Mine drainage metagenome Contig1
7322
7406
+
Leu
TAA
[ENA]
¡û
>WENV077110
AADL01001624
Acid Mine Drainage microbial communities from Richmond mine
857
944
+
Leu
TAA
[ENA]
Identical group No.95685 (4 seq.)
>A171001375
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
728811
728727
-
Leu
TAA
-
¡û
>W1610000684
ABSD01000048
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
42996
43080
+
Leu
TAA
[ENA]
¡û
>W1610000691
ABSD01000051
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
63696
63612
-
Leu
TAA
[ENA]
¡û
>W1610001705
ADFG01000020
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
2212
2128
-
Leu
TAA
[ENA]
¡û
Identical group No.97690 (1 seq.)
>At2019
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1118192
1118276
+
Leu
TAA
[Ensembl]
¡û
Identical group No.98989 (1 seq.)
>A171002867
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
256759
256843
+
Leu
TAA
-
¡û
Identical group No.100653 (1 seq.)
>A171000323
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1294817
1294733
-
Leu
TAA
-
¡û
Identical group No.100826 (2 seq.)
>At1741
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
835725
835809
+
Leu
TAA
[Ensembl]
¡û
>W1910469090
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
141520
141434
-
Leu
TAA
[ENA]
¡û
Identical group No.103058 (2 seq.)
>At1997
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
986328
986244
-
Leu
TAA
[Ensembl]
¡û
>W1911681175
QJSM01000026
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
5520
5436
-
Leu
TAA
[ENA]
¡û
Identical group No.113053 (10 seq.)
>A171003708
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1718064
1717978
-
Leu
TAA
-
¡û
>WENV180470128
OBYM01067950
[OBYM] human gut metagenome; faeces
124
38
-
Leu
TAA
[ENA]
¢þ
>WENV180620558
OCQB01122173
[OCQB] human gut metagenome; human gut
344
258
-
Leu
TAA
[ENA]
¢þ
>WENV181036121
ODXP01000249
[ODXP] human metagenome; G_DNA_Stool
46035
46121
+
Leu
TAA
[ENA]
¢þ
>WENV181088918
OEBA01007373
[OEBA] human metagenome; G_DNA_Stool
435
349
-
Leu
TAA
[ENA]
¢þ
>WENV181702098
OGPH01017775
[OGPH] human gut metagenome; faeces
389
303
-
Leu
TAA
[ENA]
¢þ
>WENV182058690
OHEP01043876
[OHEP] human gut metagenome; feces
427
341
-
Leu
TAA
[ENA]
¢þ
>WENV182535974
OIXH01000061
[OIXH] human gut metagenome; faeces
49810
49724
-
Leu
TAA
[ENA]
¢þ
>WENV183038939
OLGB01002040
[OLGB] human gut metagenome; faeces
6944
7030
+
Leu
TAA
[ENA]
¢þ
>WENV183040833
OLGD01000170
[OLGD] human gut metagenome; faeces
49813
49727
-
Leu
TAA
[ENA]
¢þ
Identical group No.152467 (1 seq.)
>A179000555
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1123349
1123250
-
Leu
TAA
-
¡û
Identical group No.154100 (8 seq.)
>A171003511
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
219503
219588
+
Leu
TAA
-
¡û
>WENV181607018
OGLM01002726
[OGLM] metagenome; Human gut stool
10070
10155
+
Leu
TAA
[ENA]
¢þ
>WENV181655757
OGOB01000972
[OGOB] metagenome; Human gut stool
5363
5448
+
Leu
TAA
[ENA]
¢þ
>WENV181772563
OGRD01006888
[OGRD] human gut metagenome; faeces
1134
1049
-
Leu
TAA
[ENA]
¢þ
>WENV182524543
OIWT01000316
[OIWT] human gut metagenome; faeces
60686
60601
-
Leu
TAA
[ENA]
¢þ
>WENV183409762
OMAG01007532
[OMAG] human gut metagenome; feces
1665
1580
-
Leu
TAA
[ENA]
¢þ
>WENV183517726
OMNP01009770
[OMNP] human gut metagenome; feces
600
685
+
Leu
TAA
[ENA]
¢þ
>W1610011078
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
89870
89785
-
Leu
TAA
[ENA]
¡û
Identical group No.161412 (3 seq.)
>A171006521
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1712446
1712361
-
Leu
TAA
-
¡û
>WENV180675067
OCVV011356578
[OCVV] gut metagenome; gut
3721
3806
+
Leu
TAA
[ENA]
¢þ
>WENV180675069
OCVV011356578
[OCVV] gut metagenome; gut
3721
3806
+
Leu
TAA
[ENA]
¢þ
Identical group No.201168 (1 seq.)
>A171002523
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
226111
226193
+
Leu
TAA
-
¡û
Identical group No.256471 (1 seq.)
>A17A000057
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1431031
1430923
-
Leu
TAA
-
¡û
Identical group No.391901 (1 seq.)
>A17A000357
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
380193
380314
+
Leu
TAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK