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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = TAG
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89057 (11 seq.)
>A171007729
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
335897
335983
+
Leu
TAG
-
¡û
>A171007766
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
318610
318696
+
Leu
TAG
-
¡û
>W141000137
AADL01001923
Unclassified
mine drainage metagenome Group III [AADL]
2459
2548
+
Leu
TAG
[ENA]
¡û
>WENV180343219
OBLK01000260
[OBLK] soil metagenome; Clay
14641
14726
+
Leu
TAG
[ENA]
¢þ
>WENV181292296
OFHE01000053
[OFHE] soil metagenome; Clay
11267
11183
-
Leu
TAG
[ENA]
¢þ
>WENV181295037
OFHI01000020
[OFHI] soil metagenome; Clay
41118
41033
-
Leu
TAG
[ENA]
¢þ
>WENV181295086
OFHI01000139
[OFHI] soil metagenome; Clay
4158
4242
+
Leu
TAG
[ENA]
¢þ
>WENV181295789
OFHJ01000617
[OFHJ] soil metagenome; Clay
11238
11154
-
Leu
TAG
[ENA]
¢þ
>WENV181296101
OFHJ01008172
[OFHJ] soil metagenome; Clay
2163
2248
+
Leu
TAG
[ENA]
¢þ
>ENV09002098
ACXJ01009628
Mine drainage metagenome Contig1
1383
1469
+
Leu
TAG
[ENA]
¡û
>WENV077145
AADL01001923
Acid Mine Drainage microbial communities from Richmond mine
2459
2548
+
Leu
TAG
[ENA]
Identical group No.95680 (4 seq.)
>A171001351
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
132701
132785
+
Leu
TAG
-
¡û
>W1610000640
ABSD01000006
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
63369
63454
+
Leu
TAG
[ENA]
¡û
>W1610000647
ABSD01000020
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
57853
57937
+
Leu
TAG
[ENA]
¡û
>W1610001710
ADFG01000036
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
9645
9729
+
Leu
TAG
[ENA]
¡û
Identical group No.97693 (1 seq.)
>At2046
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1098176
1098092
-
Leu
TAG
[Ensembl]
¡û
Identical group No.98990 (1 seq.)
>A171002887
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
818614
818530
-
Leu
TAG
-
¡û
Identical group No.100652 (1 seq.)
>A171000311
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1453725
1453641
-
Leu
TAG
-
¡û
Identical group No.100828 (2 seq.)
>At1760
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
654775
654691
-
Leu
TAG
[Ensembl]
¡û
>W1910469083
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
322131
322215
+
Leu
TAG
[ENA]
¡û
Identical group No.103055 (2 seq.)
>At1996
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
656418
656334
-
Leu
TAG
[Ensembl]
¡û
>W1911681169
QJSM01000021
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
93893
93977
+
Leu
TAG
[ENA]
¡û
Identical group No.113055 (7 seq.)
>A171003717
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
875196
875110
-
Leu
TAG
-
¡û
>WENV181035828
ODXP01000012
[ODXP] human metagenome; G_DNA_Stool
233174
233088
-
Leu
TAG
[ENA]
¢þ
>WENV181088678
OEBA01003581
[OEBA] human metagenome; G_DNA_Stool
2667
2753
+
Leu
TAG
[ENA]
¢þ
>WENV182031507
OHCS01031997
[OHCS] human gut metagenome; feces
3
89
+
Leu
TAG
[ENA]
¢þ
>WENV182536114
OIXH01000186
[OIXH] human gut metagenome; faeces
38461
38375
-
Leu
TAG
[ENA]
¢þ
>WENV183038479
OLGB01000587
[OLGB] human gut metagenome; faeces
44033
44119
+
Leu
TAG
[ENA]
¢þ
>WENV183041118
OLGD01000368
[OLGD] human gut metagenome; faeces
38461
38375
-
Leu
TAG
[ENA]
¢þ
Identical group No.119159 (8 seq.)
>A171003623
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
835276
835359
+
Leu
TAG
-
¡û
>W141000059
AADL01001282
Unclassified
mine drainage metagenome Group III [AADL]
3608
3691
+
Leu
TAG
[ENA]
¡û
>W141000094
AADL01001552
Unclassified
mine drainage metagenome Group III [AADL]
4700
4785
+
Leu
TAG
[ENA]
¡û
>W141000142
AADL01002015
Unclassified
mine drainage metagenome Group III [AADL]
932
847
-
Leu
TAG
[ENA]
¡û
>W1610000066
AABC05000010
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
139821
139904
+
Leu
TAG
[ENA]
¡û
>WENV077067
AADL01001282
Acid Mine Drainage microbial communities from Richmond mine
3608
3694
+
Leu
TAG
[ENA]
>WENV077102
AADL01001552
Acid Mine Drainage microbial communities from Richmond mine
4700
4788
+
Leu
TAG
[ENA]
>WENV077150
AADL01002015
Acid Mine Drainage microbial communities from Richmond mine
932
844
-
Leu
TAG
[ENA]
Identical group No.151109 (1 seq.)
>A171006627
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1699540
1699623
+
Leu
TAG
-
¡û
Identical group No.154098 (8 seq.)
>A171003517
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
927322
927407
+
Leu
TAG
-
¡û
>WENV181655815
OGOB01001596
[OGOB] metagenome; Human gut stool
6517
6432
-
Leu
TAG
[ENA]
¢þ
>WENV181772638
OGRD01009652
[OGRD] human gut metagenome; faeces
268
353
+
Leu
TAG
[ENA]
¢þ
>WENV182525783
OIWT01004443
[OIWT] human gut metagenome; faeces
7390
7475
+
Leu
TAG
[ENA]
¢þ
>WENV183045763
OLGE01023392
[OLGE] human gut metagenome; faeces
278
363
+
Leu
TAG
[ENA]
¢þ
>WENV183382792
OLYL01015873
[OLYL] human gut metagenome; feces
1464
1379
-
Leu
TAG
[ENA]
¢þ
>WENV183438975
OMCF01015873
[OMCF] human gut metagenome; feces
1464
1379
-
Leu
TAG
[ENA]
¢þ
>W1610011066
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
1048846
1048761
-
Leu
TAG
[ENA]
¡û
Identical group No.161245 (3 seq.)
>A171006512
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1064826
1064911
+
Leu
TAG
-
¡û
>WENV180656577
OCVV010575927
[OCVV] gut metagenome; gut
116
31
-
Leu
TAG
[ENA]
¢þ
>WENV180656578
OCVV010575927
[OCVV] gut metagenome; gut
116
31
-
Leu
TAG
[ENA]
¢þ
Identical group No.167864 (1 seq.)
>A171002553
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
856032
855949
-
Leu
TAG
-
¡û
Identical group No.178189 (1 seq.)
>C151068541
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
98864
98948
+
Leu
TAG
-
¡û
Identical group No.179205 (1 seq.)
>A171005745
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
546291
546208
-
Leu
TAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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