This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = TTC
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245170 (5 seq.)
>A171003638
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
700194
700119
-
Glu
TTC
-
¡û
>A171006630
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1567863
1567788
-
Glu
TTC
-
¡û
>W141000064
AADL01001356
Unclassified
mine drainage metagenome Group III [AADL]
2258
2181
-
Glu
TTC
[ENA]
¡û
>W1610000067
AABC05000010
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
4739
4662
-
Glu
TTC
[ENA]
¡û
>WENV077072
AADL01001356
Acid Mine Drainage microbial communities from Richmond mine
2259
2180
-
Glu
TTC
[ENA]
Identical group No.253197 (2 seq.)
>At2001
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1168574
1168500
-
Glu
TTC
[Ensembl]
¡û
>At2013
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
451837
451911
+
Glu
TTC
[Ensembl]
¡û
Identical group No.254680 (2 seq.)
>A178000312
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1394503
1394633
+
Glu
TTC
-
¡û
>A179000140
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1036070
1035941
-
Glu
TTC
-
¡û
Identical group No.256434 (1 seq.)
>A171000301
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1436693
1436770
+
Glu
TTC
-
¡û
Identical group No.256673 (2 seq.)
>At1732
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
231309
231383
+
Glu
TTC
[Ensembl]
¡û
>W1910469106
FWYE01000006
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
13053
12979
-
Glu
TTC
[ENA]
¡û
Identical group No.455545 (12 seq.)
>A171003534
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1497393
1497318
-
Glu
TTC
-
¡û
>WENV180326470
OBKS01081429
[OBKS] human gut metagenome; human gut
263
338
+
Glu
TTC
[ENA]
¢þ
>WENV180330728
OBKV01217626
[OBKV] human gut metagenome; human gut
152
227
+
Glu
TTC
[ENA]
¢þ
>WENV181606733
OGLM01000979
[OGLM] metagenome; Human gut stool
15258
15183
-
Glu
TTC
[ENA]
¢þ
>WENV181655838
OGOB01002193
[OGOB] metagenome; Human gut stool
3435
3510
+
Glu
TTC
[ENA]
¢þ
>WENV182524233
OIWT01000083
[OIWT] human gut metagenome; faeces
83164
83089
-
Glu
TTC
[ENA]
¢þ
>WENV183045388
OLGE01010053
[OLGE] human gut metagenome; faeces
642
717
+
Glu
TTC
[ENA]
¢þ
>WENV183382721
OLYL01010466
[OLYL] human gut metagenome; feces
733
658
-
Glu
TTC
[ENA]
¢þ
>WENV183409584
OMAG01001976
[OMAG] human gut metagenome; feces
1711
1786
+
Glu
TTC
[ENA]
¢þ
>WENV183438904
OMCF01010466
[OMCF] human gut metagenome; feces
733
658
-
Glu
TTC
[ENA]
¢þ
>WENV183517594
OMNP01004724
[OMNP] human gut metagenome; feces
3117
3192
+
Glu
TTC
[ENA]
¢þ
>W1610011061
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
478775
478850
+
Glu
TTC
[ENA]
¡û
Identical group No.456286 (8 seq.)
>A171003712
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1374995
1374922
-
Glu
TTC
-
¡û
>WENV181035834
ODXP01000015
[ODXP] human metagenome; G_DNA_Stool
255787
255860
+
Glu
TTC
[ENA]
¢þ
>WENV181702227
OGPH01032685
[OGPH] human gut metagenome; faeces
867
940
+
Glu
TTC
[ENA]
¢þ
>WENV182180883
OHNO01022599
[OHNO] human gut metagenome; feces
126
199
+
Glu
TTC
[ENA]
¢þ
>WENV182193870
OHPB01033226
[OHPB] human gut metagenome; feces
544
617
+
Glu
TTC
[ENA]
¢þ
>WENV182216094
OHQM01018456
[OHQM] human gut metagenome; feces
239
312
+
Glu
TTC
[ENA]
¢þ
>WENV182535784
OIXH01000001
[OIXH] human gut metagenome; faeces
210864
210791
-
Glu
TTC
[ENA]
¢þ
>WENV183040429
OLGD01000006
[OLGD] human gut metagenome; faeces
210864
210791
-
Glu
TTC
[ENA]
¢þ
Identical group No.514221 (5 seq.)
>A171006505
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
152208
152281
+
Glu
TTC
-
¡û
>WENV180660941
OCVV010976816
[OCVV] gut metagenome; gut
1087
1160
+
Glu
TTC
[ENA]
¢þ
>WENV180660942
OCVV010976816
[OCVV] gut metagenome; gut
1087
1160
+
Glu
TTC
[ENA]
¢þ
>WENV180666327
OCVV011209726
[OCVV] gut metagenome; gut
1539
1612
+
Glu
TTC
[ENA]
¢þ
>WENV180666328
OCVV011209726
[OCVV] gut metagenome; gut
1539
1612
+
Glu
TTC
[ENA]
¢þ
Identical group No.563643 (1 seq.)
>A171002547
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1306797
1306724
-
Glu
TTC
-
¡û
Identical group No.647545 (1 seq.)
>A171005749
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
112200
112127
-
Glu
TTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK