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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
metagenomic water samples (SRP000427)
Anticodon = TAT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9808 (1 seq.)
>SRA1005105
SRR006907.29788
metagenomic water samples (SRP000427)
205
112
-
Ile
TAT
[SRA]
Identical group No.235911 (3 seq.)
>WENV180210262
OBAL01178405
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
225
301
+
Ile
TAT
[ENA]
¢þ
>WENV170606631
FUWD010696229
[FUWD] metagenome; unknown
259
182
-
Ile
TAT
[ENA]
¢þ
>SRA1005114
SRR006907.38838
metagenomic water samples (SRP000427)
214
139
-
Ile
TAT
[SRA]
Identical group No.252591 (1 seq.)
>SRA1005398
SRR006907.245161
metagenomic water samples (SRP000427)
83
6
-
Ile
TAT
[SRA]
Identical group No.349130 (1 seq.)
>SRA1005137
SRR006907.56591
metagenomic water samples (SRP000427)
79
4
-
Ile
TAT
[SRA]
Identical group No.349131 (1 seq.)
>SRA1005141
SRR006907.57974
metagenomic water samples (SRP000427)
52
125
+
Ile
TAT
[SRA]
Identical group No.538008 (1 seq.)
>SRA1005096
SRR006907.23765
metagenomic water samples (SRP000427)
33
106
+
Ile
TAT
[SRA]
Identical group No.704941 (1 seq.)
>SRA1005281
SRR006907.151858
metagenomic water samples (SRP000427)
79
6
-
Ile
TAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK