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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AGG
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659368 (4 seq.)
>WENV170659096
JXWR01000032
[JXWR] soil metagenome; rice field; ambient CO2
3186
3260
+
Pro
AGG
[ENA]
¢þ
>WENV170659639
JXWR01018735
[JXWR] soil metagenome; rice field; ambient CO2
1391
1318
-
Pro
AGG
[ENA]
¢þ
>SC0100021
NC_001135
Ascomycota
Saccharomyces cerevisiae S288c
123646
123575
-
Pro
AGG
[ENA]
¡û
>SC0100180
NC_001146
Ascomycota
Saccharomyces cerevisiae S288c
631919
631847
-
Pro
AGG
[ENA]
¡û
Identical group No.687801 (2 seq.)
>FG090100009
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
347002
346931
-
Pro
AGG
[ENA]
¡û
>FG090100080
CR380948
Ascomycota
Candida glabrata CBS 138 CBS138
485118
485044
-
Pro
AGG
[ENA]
¡û
Identical group No.687815 (21 seq.)
>FG090800155
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1209796
1209711
-
Pro
AGG
[ENA]
¡û
>FG090800160
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1380176
1380261
+
Pro
AGG
[ENA]
¡û
>FU090900197
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
54949
55034
+
Pro
AGG
[ENA]
¡û
>FU090900209
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
508688
508774
+
Pro
AGG
[ENA]
¡û
>FU090900215
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2579498
2579583
+
Pro
AGG
[ENA]
¡û
>FU090900223
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1353359
1353274
-
Pro
AGG
[ENA]
¡û
>FU090900233
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1444809
1444894
+
Pro
AGG
[ENA]
¡û
>FU090900252
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1808950
1808864
-
Pro
AGG
[ENA]
¡û
>FU090900270
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
2937379
2937464
+
Pro
AGG
[ENA]
¡û
>FU090900281
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
718892
718977
+
Pro
AGG
[ENA]
¡û
>FU090900298
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3035669
3035754
+
Pro
AGG
[ENA]
¡û
>FU090900307
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3032429
3032344
-
Pro
AGG
[ENA]
¡û
>FU090900311
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2017342
2017257
-
Pro
AGG
[ENA]
¡û
>FG091900241
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1301910
1301995
+
Pro
AGG
[ENA]
¡û
>FG091900251
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1447841
1447927
+
Pro
AGG
[ENA]
¡û
>FG091900264
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1420120
1420034
-
Pro
AGG
[ENA]
¡û
>FG091900272
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
858694
858609
-
Pro
AGG
[ENA]
¡û
>FG091900275
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
715168
715083
-
Pro
AGG
[ENA]
¡û
>FG091900287
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2390453
2390538
+
Pro
AGG
[ENA]
¡û
>FG091900305
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3371715
3371630
-
Pro
AGG
[ENA]
¡û
>FG091900312
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1462765
1462680
-
Pro
AGG
[ENA]
¡û
Identical group No.687816 (1 seq.)
>FU090900182
CP000500
Ascomycota
Pichia stipitis CBS 6054
97309
97217
-
Pro
AGG
[ENA]
¡û
Identical group No.698763 (1 seq.)
>FG090100320
CR382138
Ascomycota
Debaryomyces hansenii CBS767
2045425
2045496
+
Pro
AGG
[ENA]
¡û
Identical group No.698771 (6 seq.)
>FG090100618
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1877221
1877292
+
Pro
AGG
[ENA]
¡û
>FG090100621
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
2319292
2319363
+
Pro
AGG
[ENA]
¡û
>FG090100622
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
2939715
2939786
+
Pro
AGG
[ENA]
¡û
>FG090100634
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1825858
1825787
-
Pro
AGG
[ENA]
¡û
>FG090100665
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1788949
1789020
+
Pro
AGG
[ENA]
¡û
>FG092110034
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1449469
1449398
-
Pro
AGG
[ENA]
¡û
Identical group No.735075 (1 seq.)
>FG090100356
AL590442
Microsporidia
Encephalitozoon_cuniculi_GB-M1
104134
104205
+
Pro
AGG
[ENA]
¡û
Identical group No.745860 (5 seq.)
>FG090800025
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1284832
1284930
+
Pro
AGG
[ENA]
¡û
>FG090800026
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1286695
1286792
+
Pro
AGG
[ENA]
¡û
>FG090800027
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1287455
1287552
+
Pro
AGG
[ENA]
¡û
>FG090800028
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1297850
1297753
-
Pro
AGG
[ENA]
¡û
>FG090800029
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1296964
1296867
-
Pro
AGG
[ENA]
¡û
Identical group No.757499 (1 seq.)
>FG090100484
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1176653
1176725
+
Pro
AGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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