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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AGT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281006 (5 seq.)
>FU090900071
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
519045
518952
-
Thr
AGT
[ENA]
¡û
>FU090900073
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
511851
511947
+
Thr
AGT
[ENA]
¡û
>FU090900078
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
515804
515708
-
Thr
AGT
[ENA]
¡û
>FG091900210
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1237837
1237935
+
Thr
AGT
[ENA]
¡û
>FG091900212
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
999439
999343
-
Thr
AGT
[ENA]
¡û
Identical group No.462480 (12 seq.)
>WENV182597883
OJJC01004675
[OJJC] metagenome; faeces
194
266
+
Thr
AGT
[ENA]
¢þ
>WENV182629531
OJKS01031165
[OJKS] metagenome; surface
189
117
-
Thr
AGT
[ENA]
¢þ
>FG090100082
CR380948
Ascomycota
Candida glabrata CBS 138 CBS138
118800
118728
-
Thr
AGT
[ENA]
¡û
>FG090100086
CR380949
Ascomycota
Candida glabrata CBS 138 CBS138
402196
402124
-
Thr
AGT
[ENA]
¡û
>FG090100112
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
233357
233429
+
Thr
AGT
[ENA]
¡û
>FG090100118
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
136534
136462
-
Thr
AGT
[ENA]
¡û
>FG090100122
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
143832
143904
+
Thr
AGT
[ENA]
¡û
>FG090100129
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
407211
407139
-
Thr
AGT
[ENA]
¡û
>FG090100140
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
910724
910652
-
Thr
AGT
[ENA]
¡û
>FG090100148
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
714367
714439
+
Thr
AGT
[ENA]
¡û
>FG090100188
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
883216
883144
-
Thr
AGT
[ENA]
¡û
>FG091100052
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1070347
1070273
-
Thr
AGT
[ENA]
¡û
Identical group No.462482 (1 seq.)
>FG090100369
AL590445
Microsporidia
Encephalitozoon_cuniculi_GB-M1
118514
118587
+
Thr
AGT
[ENA]
¡û
Identical group No.462489 (21 seq.)
>WENV181228936
OFEI01009648
[OFEI] insect metagenome; insect
176
102
-
Thr
AGT
[ENA]
¢þ
>WENV183751538
PPYE01018235
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1403
1475
+
Thr
AGT
[ENA]
¢þ
>WENV170659338
JXWR01003663
[JXWR] soil metagenome; rice field; ambient CO2
3621
3549
-
Thr
AGT
[ENA]
¢þ
>WENV170659493
JXWR01007036
[JXWR] soil metagenome; rice field; ambient CO2
2416
2342
-
Thr
AGT
[ENA]
¢þ
>WENV170659527
JXWR01008296
[JXWR] soil metagenome; rice field; ambient CO2
993
921
-
Thr
AGT
[ENA]
¢þ
>WENV170659543
JXWR01009039
[JXWR] soil metagenome; rice field; ambient CO2
4413
4341
-
Thr
AGT
[ENA]
¢þ
>WENV170659544
JXWR01009107
[JXWR] soil metagenome; rice field; ambient CO2
3336
3264
-
Thr
AGT
[ENA]
¢þ
>WENV170659588
JXWR01011174
[JXWR] soil metagenome; rice field; ambient CO2
184
256
+
Thr
AGT
[ENA]
¢þ
>WENV170659633
JXWR01017823
[JXWR] soil metagenome; rice field; ambient CO2
371
297
-
Thr
AGT
[ENA]
¢þ
>WENV170668485
LAFL01001141
[LAFL] hot springs metagenome; hot springs water enriched for viruses sample NL10_1002_vDNA_WGA
597
525
-
Thr
AGT
[ENA]
¢þ
>SC0100006
NC_001134
Ascomycota
Saccharomyces cerevisiae S288c
266377
266451
+
Thr
AGT
[ENA]
¡û
>SC0100017
NC_001135
Ascomycota
Saccharomyces cerevisiae S288c
295481
295553
+
Thr
AGT
[ENA]
¡û
>SC0100044
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
434333
434261
-
Thr
AGT
[ENA]
¡û
>SC0100102
NC_001140
Ascomycota
Saccharomyces cerevisiae S288c
116174
116102
-
Thr
AGT
[ENA]
¡û
>SC0100104
NC_001141
Ascomycota
Saccharomyces cerevisiae S288c
175028
175100
+
Thr
AGT
[ENA]
¡û
>SC0100108
NC_001141
Ascomycota
Saccharomyces cerevisiae S288c
325746
325818
+
Thr
AGT
[ENA]
¡û
>SC0100132
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
59172
59100
-
Thr
AGT
[ENA]
¡û
>SC0100176
NC_001146
Ascomycota
Saccharomyces cerevisiae S288c
104805
104877
+
Thr
AGT
[ENA]
¡û
>SC0100182
NC_001146
Ascomycota
Saccharomyces cerevisiae S288c
560766
560694
-
Thr
AGT
[ENA]
¡û
>SC0100184
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
113802
113874
+
Thr
AGT
[ENA]
¡û
>SC0100194
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
354114
354040
-
Thr
AGT
[ENA]
¡û
Identical group No.476359 (16 seq.)
>WENV183511978
OMJG01028569
[OMJG] food metagenome; Cotija cheese
200
126
-
Thr
AGT
[ENA]
¢þ
>FG090100245
CR382134
Ascomycota
Debaryomyces hansenii CBS767
257644
257716
+
Thr
AGT
[ENA]
¡û
>FG090100261
CR382136
Ascomycota
Debaryomyces hansenii CBS767
405309
405383
+
Thr
AGT
[ENA]
¡û
>FG090100264
CR382136
Ascomycota
Debaryomyces hansenii CBS767
592754
592826
+
Thr
AGT
[ENA]
¡û
>FG090100274
CR382137
Ascomycota
Debaryomyces hansenii CBS767
347944
348016
+
Thr
AGT
[ENA]
¡û
>FG090100298
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1406411
1406339
-
Thr
AGT
[ENA]
¡û
>FG090100300
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1313601
1313526
-
Thr
AGT
[ENA]
¡û
>FG090100509
CM000437
Ascomycota
Pichia stipitis CBS 6054
1068461
1068535
+
Thr
AGT
[ENA]
¡û
>FG090100511
CM000437
Ascomycota
Pichia stipitis CBS 6054
1608609
1608683
+
Thr
AGT
[ENA]
¡û
>FG090100522
CM000437
Ascomycota
Pichia stipitis CBS 6054
2511405
2511333
-
Thr
AGT
[ENA]
¡û
>FG090100527
CM000437
Ascomycota
Pichia stipitis CBS 6054
1993075
1993003
-
Thr
AGT
[ENA]
¡û
>FG090100532
CM000437
Ascomycota
Pichia stipitis CBS 6054
591898
591826
-
Thr
AGT
[ENA]
¡û
>FG090100550
CP000498
Ascomycota
Pichia stipitis CBS 6054
264649
264723
+
Thr
AGT
[ENA]
¡û
>FG090100580
CP000500
Ascomycota
Pichia stipitis CBS 6054
964872
964944
+
Thr
AGT
[ENA]
¡û
>FG091100168
CR382133
Ascomycota
Debaryomyces hansenii CBS767
592633
592707
+
Thr
AGT
[ENA]
¡û
>FG091100188
CR382135
Ascomycota
Debaryomyces hansenii CBS767
585574
585502
-
Thr
AGT
[ENA]
¡û
Identical group No.490183 (6 seq.)
>FG090100045
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
659465
659539
+
Thr
AGT
[ENA]
¡û
>FG090100049
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
1434164
1434236
+
Thr
AGT
[ENA]
¡û
>FG090100060
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
282716
282644
-
Thr
AGT
[ENA]
¡û
>FG091100020
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
671134
671206
+
Thr
AGT
[ENA]
¡û
>FG091100030
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
742405
742333
-
Thr
AGT
[ENA]
¡û
>FG091100061
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
1261211
1261283
+
Thr
AGT
[ENA]
¡û
Identical group No.541144 (6 seq.)
>FG090100419
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
747257
747329
+
Thr
AGT
[ENA]
¡û
>FG090100453
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1228189
1228117
-
Thr
AGT
[ENA]
¡û
>FG090100460
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
118674
118602
-
Thr
AGT
[ENA]
¡û
>FG090100470
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1570786
1570858
+
Thr
AGT
[ENA]
¡û
>FG090100501
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1691389
1691317
-
Thr
AGT
[ENA]
¡û
>FG091100108
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1035240
1035312
+
Thr
AGT
[ENA]
¡û
Identical group No.687809 (22 seq.)
>FG090100691
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
807404
807476
+
Thr
AGT
[ENA]
¡û
>FG090100692
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1244815
1244888
+
Thr
AGT
[ENA]
¡û
>FG090100702
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2361609
2361538
-
Thr
AGT
[ENA]
¡û
>FG090100706
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
946600
946528
-
Thr
AGT
[ENA]
¡û
>FG090100726
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2466933
2467004
+
Thr
AGT
[ENA]
¡û
>FG090100746
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1400892
1400965
+
Thr
AGT
[ENA]
¡û
>FG090100747
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1489265
1489336
+
Thr
AGT
[ENA]
¡û
>FG090100751
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
2142183
2142254
+
Thr
AGT
[ENA]
¡û
>FG090100759
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1310257
1310186
-
Thr
AGT
[ENA]
¡û
>FG090100760
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1203513
1203440
-
Thr
AGT
[ENA]
¡û
>FG090100764
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
405759
405830
+
Thr
AGT
[ENA]
¡û
>FG090100769
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2971229
2971300
+
Thr
AGT
[ENA]
¡û
>FG090100774
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3562979
3562908
-
Thr
AGT
[ENA]
¡û
>FG090100780
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2624871
2624798
-
Thr
AGT
[ENA]
¡û
>FG090100787
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
428568
428495
-
Thr
AGT
[ENA]
¡û
>FG091100118
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
576798
576869
+
Thr
AGT
[ENA]
¡û
>FG091100120
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
608437
608511
+
Thr
AGT
[ENA]
¡û
>FG091100122
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
712976
713048
+
Thr
AGT
[ENA]
¡û
>FG091100135
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1611931
1611859
-
Thr
AGT
[ENA]
¡û
>FG091100141
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
901243
901172
-
Thr
AGT
[ENA]
¡û
>FG091100146
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
532052
531981
-
Thr
AGT
[ENA]
¡û
>FG091100166
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
758822
758751
-
Thr
AGT
[ENA]
¡û
Identical group No.698773 (6 seq.)
>FG090100630
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
2790446
2790375
-
Thr
AGT
[ENA]
¡û
>FG090100661
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1105840
1105911
+
Thr
AGT
[ENA]
¡û
>FG090100677
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1093154
1093083
-
Thr
AGT
[ENA]
¡û
>FG092110007
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
2433048
2433119
+
Thr
AGT
[ENA]
¡û
>FG092110019
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
4715431
4715502
+
Thr
AGT
[ENA]
¡û
>FG092110033
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1603376
1603305
-
Thr
AGT
[ENA]
¡û
Identical group No.714655 (1 seq.)
>FG092110029
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
2844745
2844674
-
Thr
AGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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