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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CCG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352290 (2 seq.)
>FG090100547
CP000497
Ascomycota
Pichia stipitis CBS 6054
459526
459451
-
Arg
CCG
[ENA]
¡û
>FU090900099
CR382135
Ascomycota
Debaryomyces hansenii CBS767
195446
195530
+
Arg
CCG
[ENA]
¡û
Identical group No.706732 (1 seq.)
>FG090100437
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
518415
518342
-
Arg
CCG
[ENA]
¡û
Identical group No.706741 (2 seq.)
>WENV170659655
JXWR01020259
[JXWR] soil metagenome; rice field; ambient CO2
1378
1307
-
Arg
CCG
[ENA]
¢þ
>SC0100151
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
818609
818680
+
Arg
CCG
[ENA]
¡û
Identical group No.714656 (1 seq.)
>FG092910019
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3443055
3443144
+
Arg
CCG
[ENA]
¡û
Identical group No.735079 (2 seq.)
>FG090200003
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
745195
745116
-
Arg
CCG
[ENA]
¡û
>FU090900080
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
745195
745116
-
Arg
CCG
[ENA]
¡û
Identical group No.745854 (2 seq.)
>FG090100027
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
37332
37261
-
Arg
CCG
[ENA]
¡û
>FG091100045
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1294253
1294324
+
Arg
CCG
[ENA]
¡û
Identical group No.757494 (1 seq.)
>FG090100181
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
380646
380717
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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