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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CTC
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659363 (5 seq.)
>FG090800022
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
33888
33985
+
Glu
CTC
[ENA]
¡û
>FG090800023
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
12772
12677
-
Glu
CTC
[ENA]
¡û
>FG091800019
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
12773
12674
-
Glu
CTC
[ENA]
¡û
>FG091800020
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
33887
33986
+
Glu
CTC
[ENA]
¡û
>FG091900214
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
642881
642786
-
Glu
CTC
[ENA]
¡û
Identical group No.675916 (2 seq.)
>FG090100505
CM000437
Ascomycota
Pichia stipitis CBS 6054
120619
120693
+
Glu
CTC
[ENA]
¡û
>FG090100543
CP000496
Ascomycota
Pichia stipitis CBS 6054
372483
372409
-
Glu
CTC
[ENA]
¡û
Identical group No.675936 (8 seq.)
>FG090100044
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
649867
649940
+
Glu
CTC
[ENA]
¡û
>FG090100062
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
151985
151912
-
Glu
CTC
[ENA]
¡û
>FG090100066
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
344586
344513
-
Glu
CTC
[ENA]
¡û
>FG091100004
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
613876
613947
+
Glu
CTC
[ENA]
¡û
>FG091100008
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
605945
605872
-
Glu
CTC
[ENA]
¡û
>FG091100013
AE016815
Ascomycota
Ashbya gossypii ATCC 10895
757705
757778
+
Glu
CTC
[ENA]
¡û
>FG091100014
AE016815
Ascomycota
Ashbya gossypii ATCC 10895
854292
854220
-
Glu
CTC
[ENA]
¡û
>FG091100054
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
730327
730254
-
Glu
CTC
[ENA]
¡û
Identical group No.687811 (50 seq.)
>FG090200019
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
3463243
3463160
-
Glu
CTC
[ENA]
¡û
>FG090200020
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
36747
36830
+
Glu
CTC
[ENA]
¡û
>FG090200021
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
319514
319432
-
Glu
CTC
[ENA]
¡û
>FG090200023
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1552778
1552871
+
Glu
CTC
[ENA]
¡û
>FG090700005
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
449053
448973
-
Glu
CTC
[ENA]
¡û
>FG090700007
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1189297
1189377
+
Glu
CTC
[ENA]
¡û
>FG090700009
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2859544
2859464
-
Glu
CTC
[ENA]
¡û
>FG090700010
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2795214
2795134
-
Glu
CTC
[ENA]
¡û
>FG090700011
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2578573
2578493
-
Glu
CTC
[ENA]
¡û
>FG090700013
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
213148
213068
-
Glu
CTC
[ENA]
¡û
>FG090700014
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
480733
480813
+
Glu
CTC
[ENA]
¡û
>FG090700015
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
705811
705891
+
Glu
CTC
[ENA]
¡û
>FG090700016
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
780996
781076
+
Glu
CTC
[ENA]
¡û
>FG090700019
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2064302
2064382
+
Glu
CTC
[ENA]
¡û
>FG090700020
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2193268
2193348
+
Glu
CTC
[ENA]
¡û
>FG090700021
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2831246
2831326
+
Glu
CTC
[ENA]
¡û
>FG090700022
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3031081
3031161
+
Glu
CTC
[ENA]
¡û
>FG090700023
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3171018
3171109
+
Glu
CTC
[ENA]
¡û
>FG090700024
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3531926
3532007
+
Glu
CTC
[ENA]
¡û
>FU090900203
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
449053
448973
-
Glu
CTC
[ENA]
¡û
>FU090900212
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1189297
1189377
+
Glu
CTC
[ENA]
¡û
>FU090900217
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2859544
2859464
-
Glu
CTC
[ENA]
¡û
>FU090900244
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2795214
2795134
-
Glu
CTC
[ENA]
¡û
>FU090900245
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2766879
2766799
-
Glu
CTC
[ENA]
¡û
>FU090900247
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2578573
2578493
-
Glu
CTC
[ENA]
¡û
>FU090900257
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
285512
285432
-
Glu
CTC
[ENA]
¡û
>FU090900258
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
213148
213068
-
Glu
CTC
[ENA]
¡û
>FU090900262
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
480733
480813
+
Glu
CTC
[ENA]
¡û
>FU090900264
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
705811
705891
+
Glu
CTC
[ENA]
¡û
>FU090900265
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
780996
781076
+
Glu
CTC
[ENA]
¡û
>FU090900273
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
3463242
3463162
-
Glu
CTC
[ENA]
¡û
>FU090900280
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
36748
36828
+
Glu
CTC
[ENA]
¡û
>FU090900288
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1552779
1552870
+
Glu
CTC
[ENA]
¡û
>FU090900291
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2064302
2064382
+
Glu
CTC
[ENA]
¡û
>FU090900292
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2193268
2193348
+
Glu
CTC
[ENA]
¡û
>FU090900296
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2831246
2831326
+
Glu
CTC
[ENA]
¡û
>FU090900297
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3031081
3031161
+
Glu
CTC
[ENA]
¡û
>FU090900300
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3171018
3171109
+
Glu
CTC
[ENA]
¡û
>FU090900302
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3531926
3532007
+
Glu
CTC
[ENA]
¡û
>FU090900320
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
319513
319433
-
Glu
CTC
[ENA]
¡û
>FG091200013
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2856436
2856518
+
Glu
CTC
[ENA]
¡û
>FG091700001
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1883371
1883291
-
Glu
CTC
[ENA]
¡û
>FG091700002
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1297383
1297303
-
Glu
CTC
[ENA]
¡û
>FG091700003
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1251859
1251779
-
Glu
CTC
[ENA]
¡û
>FG091700004
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
582471
582391
-
Glu
CTC
[ENA]
¡û
>FG091900258
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1883371
1883291
-
Glu
CTC
[ENA]
¡û
>FG091900267
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1297383
1297303
-
Glu
CTC
[ENA]
¡û
>FG091900269
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1251859
1251779
-
Glu
CTC
[ENA]
¡û
>FG091900277
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
582471
582391
-
Glu
CTC
[ENA]
¡û
>FG091900289
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2856437
2856517
+
Glu
CTC
[ENA]
¡û
Identical group No.698769 (6 seq.)
>FG090100610
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
820491
820562
+
Glu
CTC
[ENA]
¡û
>FG090100626
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
4107639
4107710
+
Glu
CTC
[ENA]
¡û
>FG090100651
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
140967
141038
+
Glu
CTC
[ENA]
¡û
>FG090100676
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1097570
1097499
-
Glu
CTC
[ENA]
¡û
>FG092110016
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3776768
3776839
+
Glu
CTC
[ENA]
¡û
>FG092110025
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3765505
3765434
-
Glu
CTC
[ENA]
¡û
Identical group No.706731 (2 seq.)
>FG090100435
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
548670
548597
-
Glu
CTC
[ENA]
¡û
>FG090100479
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
544290
544361
+
Glu
CTC
[ENA]
¡û
Identical group No.706738 (6 seq.)
>FG090800020
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
168188
168283
+
Glu
CTC
[ENA]
¡û
>FG090800042
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
119342
119438
+
Glu
CTC
[ENA]
¡û
>FG090800046
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
120117
120021
-
Glu
CTC
[ENA]
¡û
>FG090800047
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
100305
100211
-
Glu
CTC
[ENA]
¡û
>FG091800011
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
2281275
2281185
-
Glu
CTC
[ENA]
¡û
>FG091800014
AE017342
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1542184
1542088
-
Glu
CTC
[ENA]
¡û
Identical group No.714649 (3 seq.)
>FG090100092
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
425739
425812
+
Glu
CTC
[ENA]
¡û
>FG090100178
CR380956
Ascomycota
Candida glabrata CBS 138 CBS138
10213
10142
-
Glu
CTC
[ENA]
¡û
>FG090100205
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
1081442
1081371
-
Glu
CTC
[ENA]
¡û
Identical group No.718785 (4 seq.)
>WENV183751601
PPYE01022016
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1245
1174
-
Glu
CTC
[ENA]
¢þ
>WENV170659220
JXWR01001678
[JXWR] soil metagenome; rice field; ambient CO2
1314
1243
-
Glu
CTC
[ENA]
¢þ
>SC0100037
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
1017274
1017203
-
Glu
CTC
[ENA]
¡û
>SC0100105
NC_001141
Ascomycota
Saccharomyces cerevisiae S288c
197589
197660
+
Glu
CTC
[ENA]
¡û
Identical group No.735077 (1 seq.)
>FG090100384
AL590448
Microsporidia
Encephalitozoon_cuniculi_GB-M1
32736
32665
-
Glu
CTC
[ENA]
¡û
Identical group No.735081 (2 seq.)
>FG090700006
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
25708
25788
+
Glu
CTC
[ENA]
¡û
>FG090800110
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
25708
25788
+
Glu
CTC
[ENA]
¡û
Identical group No.752674 (1 seq.)
>FG090100269
CR382136
Ascomycota
Debaryomyces hansenii CBS767
368833
368762
-
Glu
CTC
[ENA]
¡û
Identical group No.794848 (1 seq.)
>FG090500018
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2766879
2766799
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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