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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GTG
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.408628 (2 seq.)
>FG090500004
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1040734
1040648
-
His
GTG
[ENA]
¡û
>FU090900069
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1040734
1040648
-
His
GTG
[ENA]
¡û
Identical group No.675945 (4 seq.)
>FG090100530
CM000437
Ascomycota
Pichia stipitis CBS 6054
1165053
1164982
-
His
GTG
[ENA]
¡û
>FG090100590
CP000500
Ascomycota
Pichia stipitis CBS 6054
1043353
1043282
-
His
GTG
[ENA]
¡û
>FG091100077
CP000496
Ascomycota
Pichia stipitis CBS 6054
2112251
2112180
-
His
GTG
[ENA]
¡û
>FG091100101
CP000502
Ascomycota
Pichia stipitis CBS 6054
450177
450106
-
His
GTG
[ENA]
¡û
Identical group No.687803 (6 seq.)
>WENV182597872
OJJC01003625
[OJJC] metagenome; faeces
196
125
-
His
GTG
[ENA]
¢þ
>FG090100074
CR380947
Ascomycota
Candida glabrata CBS 138 CBS138
387577
387504
-
His
GTG
[ENA]
¡û
>FG090100088
CR380949
Ascomycota
Candida glabrata CBS 138 CBS138
304635
304562
-
His
GTG
[ENA]
¡û
>FG090100109
CR380951
Ascomycota
Candida glabrata CBS 138 CBS138
331589
331516
-
His
GTG
[ENA]
¡û
>FG090100189
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
851617
851546
-
His
GTG
[ENA]
¡û
>FG090100195
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
560500
560573
+
His
GTG
[ENA]
¡û
Identical group No.698768 (4 seq.)
>FG090100607
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
464238
464309
+
His
GTG
[ENA]
¡û
>FG090100611
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
960729
960801
+
His
GTG
[ENA]
¡û
>FG090100650
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
71400
71471
+
His
GTG
[ENA]
¡û
>FG090100666
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1844639
1844710
+
His
GTG
[ENA]
¡û
Identical group No.706735 (11 seq.)
>FG090100703
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2154472
2154401
-
His
GTG
[ENA]
¡û
>FG090100756
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
2566917
2566846
-
His
GTG
[ENA]
¡û
>FG090100757
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
2048385
2048314
-
His
GTG
[ENA]
¡û
>FG090100763
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
192166
192237
+
His
GTG
[ENA]
¡û
>FG090100781
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2385691
2385618
-
His
GTG
[ENA]
¡û
>FG090100783
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1348328
1348257
-
His
GTG
[ENA]
¡û
>FG090100784
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1348086
1348015
-
His
GTG
[ENA]
¡û
>FG090800105
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
452923
452828
-
His
GTG
[ENA]
¡û
>FG090800150
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
2819302
2819216
-
His
GTG
[ENA]
¡û
>FU090900211
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
989904
989997
+
His
GTG
[ENA]
¡û
>FG091100162
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1816434
1816363
-
His
GTG
[ENA]
¡û
Identical group No.706739 (16 seq.)
>WENV181967846
OGZV01031919
[OGZV] human gut metagenome; faeces
216
145
-
His
GTG
[ENA]
¢þ
>WENV183121066
OLNU01050546
[OLNU] human gut metagenome; faeces
74
3
-
His
GTG
[ENA]
¢þ
>WENV170659150
JXWR01000626
[JXWR] soil metagenome; rice field; ambient CO2
72
1
-
His
GTG
[ENA]
¢þ
>WENV170659494
JXWR01007037
[JXWR] soil metagenome; rice field; ambient CO2
142
215
+
His
GTG
[ENA]
¢þ
>WENV170659546
JXWR01009488
[JXWR] soil metagenome; rice field; ambient CO2
1843
1916
+
His
GTG
[ENA]
¢þ
>WENV170659673
JXWR01024928
[JXWR] soil metagenome; rice field; ambient CO2
1243
1172
-
His
GTG
[ENA]
¢þ
>FG090100115
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
616515
616444
-
His
GTG
[ENA]
¡û
>SC0100049
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
207356
207427
+
His
GTG
[ENA]
¡û
>SC0100059
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
434608
434537
-
His
GTG
[ENA]
¡û
>SC0100070
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
319784
319855
+
His
GTG
[ENA]
¡û
>SC0100094
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
110701
110628
-
His
GTG
[ENA]
¡û
>SC0100096
NC_001140
Ascomycota
Saccharomyces cerevisiae S288c
62752
62825
+
His
GTG
[ENA]
¡û
>SC0100141
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
313117
313044
-
His
GTG
[ENA]
¡û
>SC0100161
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
363062
363135
+
His
GTG
[ENA]
¡û
>W1610134732
FABQ01002460
Bacillota
Clostridioides difficile [FABQ]
36
109
+
His
GTG
[ENA]
¡û
>W1710136399
FABQ01002460
Bacillota
Clostridioides difficile [FABQ]
36
109
+
His
GTG
[ENA]
¡û
Identical group No.714647 (1 seq.)
>FG090100048
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
1294457
1294530
+
His
GTG
[ENA]
¡û
Identical group No.728029 (1 seq.)
>FG090800145
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1743228
1743315
+
His
GTG
[ENA]
¡û
Identical group No.735071 (5 seq.)
>FG090100277
CR382137
Ascomycota
Debaryomyces hansenii CBS767
577023
577094
+
His
GTG
[ENA]
¡û
>FG090100299
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1315428
1315357
-
His
GTG
[ENA]
¡û
>FG090100302
CR382137
Ascomycota
Debaryomyces hansenii CBS767
805634
805561
-
His
GTG
[ENA]
¡û
>FG090100340
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1562933
1563004
+
His
GTG
[ENA]
¡û
>FG091100172
CR382133
Ascomycota
Debaryomyces hansenii CBS767
907224
907153
-
His
GTG
[ENA]
¡û
Identical group No.735082 (2 seq.)
>FG090100231
AE017342
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
221818
221747
-
His
GTG
[ENA]
¡û
>FG090800043
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
909953
910034
+
His
GTG
[ENA]
¡û
Identical group No.741434 (1 seq.)
>FG091100001
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
524796
524867
+
His
GTG
[ENA]
¡û
Identical group No.741435 (1 seq.)
>FG091100005
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
671672
671745
+
His
GTG
[ENA]
¡û
Identical group No.745855 (1 seq.)
>FG090100234
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1059118
1059047
-
His
GTG
[ENA]
¡û
Identical group No.745857 (4 seq.)
>FG090100471
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1809819
1809890
+
His
GTG
[ENA]
¡û
>FG090100491
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2470952
2470881
-
His
GTG
[ENA]
¡û
>FG090100496
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2118240
2118167
-
His
GTG
[ENA]
¡û
>FG090100500
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1910167
1910096
-
His
GTG
[ENA]
¡û
Identical group No.762146 (1 seq.)
>FG091100037
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
794763
794834
+
His
GTG
[ENA]
¡û
Identical group No.762150 (1 seq.)
>FG091100057
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
644979
644906
-
His
GTG
[ENA]
¡û
Identical group No.813226 (1 seq.)
>FG090100395
AL590451
Microsporidia
Encephalitozoon_cuniculi_GB-M1
221638
221708
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK