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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TAA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114260 (18 seq.)
>WENV182629537
OJKS01032687
[OJKS] metagenome; surface
241
156
-
Leu
TAA
[ENA]
¢þ
>WENV170659153
JXWR01000695
[JXWR] soil metagenome; rice field; ambient CO2
169
84
-
Leu
TAA
[ENA]
¢þ
>WENV170659224
JXWR01001735
[JXWR] soil metagenome; rice field; ambient CO2
5248
5333
+
Leu
TAA
[ENA]
¢þ
>WENV170659229
JXWR01001850
[JXWR] soil metagenome; rice field; ambient CO2
179
264
+
Leu
TAA
[ENA]
¢þ
>WENV170659459
JXWR01005958
[JXWR] soil metagenome; rice field; ambient CO2
3958
3875
-
Leu
TAA
[ENA]
¢þ
>WENV170659556
JXWR01009807
[JXWR] soil metagenome; rice field; ambient CO2
1480
1395
-
Leu
TAA
[ENA]
¢þ
>WENV170659658
JXWR01021421
[JXWR] soil metagenome; rice field; ambient CO2
752
669
-
Leu
TAA
[ENA]
¢þ
>WENV170668490
LAFL01004345
[LAFL] hot springs metagenome; hot springs water enriched for viruses sample NL10_1002_vDNA_WGA
255
172
-
Leu
TAA
[ENA]
¢þ
>FG090100089
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
40062
40147
+
Leu
TAA
[ENA]
¡û
>FG090100137
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
531206
531290
+
Leu
TAA
[ENA]
¡û
>FG090100185
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
1152761
1152846
+
Leu
TAA
[ENA]
¡û
>SC0100003
NC_001134
Ascomycota
Saccharomyces cerevisiae S288c
9582
9667
+
Leu
TAA
[ENA]
¡û
>SC0100007
NC_001134
Ascomycota
Saccharomyces cerevisiae S288c
347601
347684
+
Leu
TAA
[ENA]
¡û
>SC0100026
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
519740
519823
+
Leu
TAA
[ENA]
¡û
>SC0100125
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
424510
424425
-
Leu
TAA
[ENA]
¡û
>SC0100134
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
84212
84297
+
Leu
TAA
[ENA]
¡û
>SC0100154
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
963052
962969
-
Leu
TAA
[ENA]
¡û
>SC0100179
NC_001146
Ascomycota
Saccharomyces cerevisiae S288c
726219
726134
-
Leu
TAA
[ENA]
¡û
Identical group No.127461 (9 seq.)
>FG090100242
CR382133
Ascomycota
Debaryomyces hansenii CBS767
167845
167760
-
Leu
TAA
[ENA]
¡û
>FG090100255
CR382134
Ascomycota
Debaryomyces hansenii CBS767
869279
869194
-
Leu
TAA
[ENA]
¡û
>FG090100256
CR382134
Ascomycota
Debaryomyces hansenii CBS767
522988
522903
-
Leu
TAA
[ENA]
¡û
>FG090100271
CR382136
Ascomycota
Debaryomyces hansenii CBS767
163871
163786
-
Leu
TAA
[ENA]
¡û
>FG090100284
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1422323
1422408
+
Leu
TAA
[ENA]
¡û
>FG090100319
CR382138
Ascomycota
Debaryomyces hansenii CBS767
1989390
1989475
+
Leu
TAA
[ENA]
¡û
>FG090100322
CR382138
Ascomycota
Debaryomyces hansenii CBS767
1916098
1916013
-
Leu
TAA
[ENA]
¡û
>FG090100344
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1894907
1894992
+
Leu
TAA
[ENA]
¡û
>FG091100185
CR382135
Ascomycota
Debaryomyces hansenii CBS767
611649
611564
-
Leu
TAA
[ENA]
¡û
Identical group No.132935 (1 seq.)
>FG090100046
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
816391
816476
+
Leu
TAA
[ENA]
¡û
Identical group No.132936 (1 seq.)
>FG090100051
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
1420604
1420521
-
Leu
TAA
[ENA]
¡û
Identical group No.135228 (1 seq.)
>FG091100159
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3058052
3057969
-
Leu
TAA
[ENA]
¡û
Identical group No.151396 (2 seq.)
>FG090100441
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
263096
263181
+
Leu
TAA
[ENA]
¡û
>FG090100458
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
263590
263505
-
Leu
TAA
[ENA]
¡û
Identical group No.151397 (1 seq.)
>FG090100459
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
261912
261827
-
Leu
TAA
[ENA]
¡û
Identical group No.154942 (1 seq.)
>FG090100368
AL590445
Microsporidia
Encephalitozoon_cuniculi_GB-M1
87231
87313
+
Leu
TAA
[ENA]
¡û
Identical group No.158347 (3 seq.)
>FG090100526
CM000437
Ascomycota
Pichia stipitis CBS 6054
2254377
2254293
-
Leu
TAA
[ENA]
¡û
>FG090100533
CM000437
Ascomycota
Pichia stipitis CBS 6054
448874
448790
-
Leu
TAA
[ENA]
¡û
>FG091100079
CP000496
Ascomycota
Pichia stipitis CBS 6054
1404599
1404515
-
Leu
TAA
[ENA]
¡û
Identical group No.172242 (1 seq.)
>FG091900200
AE017342
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1500828
1500924
+
Leu
TAA
[ENA]
¡û
Identical group No.194238 (2 seq.)
>FG092910015
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
2802858
2802761
-
Leu
TAA
[ENA]
¡û
>FU090900190
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1402541
1402444
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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