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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TAC
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323952 (1 seq.)
>FG090100591
CP000500
Ascomycota
Pichia stipitis CBS 6054
581353
581278
-
Val
TAC
[ENA]
¡û
Identical group No.323954 (2 seq.)
>FG090100723
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2224214
2224289
+
Val
TAC
[ENA]
¡û
>FG090100766
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2300984
2301057
+
Val
TAC
[ENA]
¡û
Identical group No.363853 (2 seq.)
>FG090100052
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
1420511
1420437
-
Val
TAC
[ENA]
¡û
>FG090100406
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
926295
926368
+
Val
TAC
[ENA]
¡û
Identical group No.369922 (4 seq.)
>WENV170659148
JXWR01000596
[JXWR] soil metagenome; rice field; ambient CO2
158
231
+
Val
TAC
[ENA]
¢þ
>WENV170659336
JXWR01003594
[JXWR] soil metagenome; rice field; ambient CO2
329
402
+
Val
TAC
[ENA]
¢þ
>SC0100013
NC_001134
Ascomycota
Saccharomyces cerevisiae S288c
326864
326791
-
Val
TAC
[ENA]
¡û
>SC0100043
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
488867
488794
-
Val
TAC
[ENA]
¡û
Identical group No.382653 (1 seq.)
>FG090100138
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
965518
965444
-
Val
TAC
[ENA]
¡û
Identical group No.402057 (1 seq.)
>FG090100002
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
191699
191774
+
Val
TAC
[ENA]
¡û
Identical group No.424027 (1 seq.)
>FG090100186
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
1128121
1128044
-
Val
TAC
[ENA]
¡û
Identical group No.528434 (2 seq.)
>FG090800075
CM000437
Ascomycota
Pichia stipitis CBS 6054
3180652
3180744
+
Val
TAC
[ENA]
¡û
>FU090900118
CR382138
Ascomycota
Debaryomyces hansenii CBS767
775086
774995
-
Val
TAC
[ENA]
¡û
Identical group No.554018 (2 seq.)
>FG090100673
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1206819
1206747
-
Val
TAC
[ENA]
¡û
>FG092110037
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
703148
703073
-
Val
TAC
[ENA]
¡û
Identical group No.641864 (1 seq.)
>FG090100361
AL590443
Microsporidia
Encephalitozoon_cuniculi_GB-M1
152612
152684
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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