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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TCC
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381932 (2 seq.)
>FG090800071
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
26345
26444
+
Gly
TCC
[ENA]
¡û
>FG090800072
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
310699
310809
+
Gly
TCC
[ENA]
¡û
Identical group No.403553 (10 seq.)
>WENV181967324
OGZV01003563
[OGZV] human gut metagenome; faeces
178
105
-
Gly
TCC
[ENA]
¢þ
>WENV170659468
JXWR01006197
[JXWR] soil metagenome; rice field; ambient CO2
169
242
+
Gly
TCC
[ENA]
¢þ
>WENV170659609
JXWR01013814
[JXWR] soil metagenome; rice field; ambient CO2
1665
1594
-
Gly
TCC
[ENA]
¢þ
>FG090100061
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
272738
272667
-
Gly
TCC
[ENA]
¡û
>FG090100111
CR380951
Ascomycota
Candida glabrata CBS 138 CBS138
218754
218683
-
Gly
TCC
[ENA]
¡û
>FG090100167
CR380956
Ascomycota
Candida glabrata CBS 138 CBS138
617360
617289
-
Gly
TCC
[ENA]
¡û
>SC0100080
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
779621
779692
+
Gly
TCC
[ENA]
¡û
>SC0100183
NC_001146
Ascomycota
Saccharomyces cerevisiae S288c
96313
96240
-
Gly
TCC
[ENA]
¡û
>SC0100197
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
111033
110962
-
Gly
TCC
[ENA]
¡û
>FG091100015
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
750894
750967
+
Gly
TCC
[ENA]
¡û
Identical group No.403573 (3 seq.)
>FU090900076
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1145686
1145765
+
Gly
TCC
[ENA]
¡û
>FG091100069
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1052585
1052657
+
Gly
TCC
[ENA]
¡û
>FG091100072
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1164559
1164487
-
Gly
TCC
[ENA]
¡û
Identical group No.415209 (6 seq.)
>FG090100337
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1353590
1353661
+
Gly
TCC
[ENA]
¡û
>FG090100518
CM000437
Ascomycota
Pichia stipitis CBS 6054
2483623
2483696
+
Gly
TCC
[ENA]
¡û
>FG090100548
CP000498
Ascomycota
Pichia stipitis CBS 6054
236994
237067
+
Gly
TCC
[ENA]
¡û
>FG090100601
CP000502
Ascomycota
Pichia stipitis CBS 6054
381366
381437
+
Gly
TCC
[ENA]
¡û
>FG091100169
CR382133
Ascomycota
Debaryomyces hansenii CBS767
992522
992451
-
Gly
TCC
[ENA]
¡û
>FG091100170
CR382133
Ascomycota
Debaryomyces hansenii CBS767
992203
992132
-
Gly
TCC
[ENA]
¡û
Identical group No.435477 (1 seq.)
>FG090100354
AL391737
Microsporidia
Encephalitozoon_cuniculi_GB-M1
55599
55671
+
Gly
TCC
[ENA]
¡û
Identical group No.463975 (1 seq.)
>FG091100194
CR382136
Ascomycota
Debaryomyces hansenii CBS767
1466613
1466542
-
Gly
TCC
[ENA]
¡û
Identical group No.491344 (13 seq.)
>FG090500012
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
340343
340263
-
Gly
TCC
[ENA]
¡û
>FG090800107
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
245126
245046
-
Gly
TCC
[ENA]
¡û
>FG090800136
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2579404
2579317
-
Gly
TCC
[ENA]
¡û
>FG090800153
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1733853
1733773
-
Gly
TCC
[ENA]
¡û
>FG090800154
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1658396
1658316
-
Gly
TCC
[ENA]
¡û
>FG090800159
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
990930
991010
+
Gly
TCC
[ENA]
¡û
>FU090900206
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
340343
340263
-
Gly
TCC
[ENA]
¡û
>FU090900222
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1455005
1454925
-
Gly
TCC
[ENA]
¡û
>FG091500007
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1309693
1309774
+
Gly
TCC
[ENA]
¡û
>FG091800041
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1294093
1294173
+
Gly
TCC
[ENA]
¡û
>FG091800048
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1758698
1758778
+
Gly
TCC
[ENA]
¡û
>FG091800060
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3667372
3667289
-
Gly
TCC
[ENA]
¡û
>FG091900242
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1309693
1309773
+
Gly
TCC
[ENA]
¡û
Identical group No.494837 (2 seq.)
>FG090100605
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
326235
326305
+
Gly
TCC
[ENA]
¡û
>FG090100668
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
2037351
2037423
+
Gly
TCC
[ENA]
¡û
Identical group No.494841 (1 seq.)
>FG090100646
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
285459
285389
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK