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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TCT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.510139 (15 seq.)
>FG090100260
CR382136
Ascomycota
Debaryomyces hansenii CBS767
384594
384667
+
Arg
TCT
[ENA]
¡û
>FG090100266
CR382136
Ascomycota
Debaryomyces hansenii CBS767
625132
625205
+
Arg
TCT
[ENA]
¡û
>FG090100279
CR382137
Ascomycota
Debaryomyces hansenii CBS767
789012
789084
+
Arg
TCT
[ENA]
¡û
>FG090100301
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1246887
1246815
-
Arg
TCT
[ENA]
¡û
>FG090100313
CR382138
Ascomycota
Debaryomyces hansenii CBS767
559515
559587
+
Arg
TCT
[ENA]
¡û
>FG090100314
CR382138
Ascomycota
Debaryomyces hansenii CBS767
609712
609784
+
Arg
TCT
[ENA]
¡û
>FG090100328
CR382139
Ascomycota
Debaryomyces hansenii CBS767
151387
151460
+
Arg
TCT
[ENA]
¡û
>FG090100338
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1381963
1382035
+
Arg
TCT
[ENA]
¡û
>FG090100515
CM000437
Ascomycota
Pichia stipitis CBS 6054
1957161
1957233
+
Arg
TCT
[ENA]
¡û
>FG090100536
CM000437
Ascomycota
Pichia stipitis CBS 6054
146939
146866
-
Arg
TCT
[ENA]
¡û
>FG090100552
CP000498
Ascomycota
Pichia stipitis CBS 6054
1575449
1575522
+
Arg
TCT
[ENA]
¡û
>FG090100567
CP000499
Ascomycota
Pichia stipitis CBS 6054
685066
685138
+
Arg
TCT
[ENA]
¡û
>FG090100571
CP000499
Ascomycota
Pichia stipitis CBS 6054
1377095
1377168
+
Arg
TCT
[ENA]
¡û
>FG090100578
CP000500
Ascomycota
Pichia stipitis CBS 6054
790658
790733
+
Arg
TCT
[ENA]
¡û
>FG091100100
CP000497
Ascomycota
Pichia stipitis CBS 6054
1296627
1296555
-
Arg
TCT
[ENA]
¡û
Identical group No.510140 (4 seq.)
>FG090100704
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1502743
1502670
-
Arg
TCT
[ENA]
¡û
>FG090100722
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2043064
2043138
+
Arg
TCT
[ENA]
¡û
>FG090100772
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3256854
3256927
+
Arg
TCT
[ENA]
¡û
>FG091100157
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3262688
3262616
-
Arg
TCT
[ENA]
¡û
Identical group No.528431 (1 seq.)
>FG090100645
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
326724
326652
-
Arg
TCT
[ENA]
¡û
Identical group No.554013 (1 seq.)
>FG090100246
CR382134
Ascomycota
Debaryomyces hansenii CBS767
396599
396672
+
Arg
TCT
[ENA]
¡û
Identical group No.586972 (1 seq.)
>FG090100383
AL590448
Microsporidia
Encephalitozoon_cuniculi_GB-M1
79525
79453
-
Arg
TCT
[ENA]
¡û
Identical group No.597163 (1 seq.)
>FG090100652
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
578846
578920
+
Arg
TCT
[ENA]
¡û
Identical group No.604504 (1 seq.)
>FG090800024
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1124405
1124493
+
Arg
TCT
[ENA]
¡û
Identical group No.659360 (32 seq.)
>WENV180024569
FTIH01322214
[FTIH] metagenome; soil
85
13
-
Arg
TCT
[ENA]
¢þ
>WENV180315454
OBKH01097399
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
196
267
+
Arg
TCT
[ENA]
¢þ
>WENV182597845
OJJC01000919
[OJJC] metagenome; faeces
273
201
-
Arg
TCT
[ENA]
¢þ
>WENV182629490
OJKS01011066
[OJKS] metagenome; surface
465
537
+
Arg
TCT
[ENA]
¢þ
>WENV183064646
OLIH01028619
[OLIH] metagenome; faeces
386
314
-
Arg
TCT
[ENA]
¢þ
>WENV170659548
JXWR01009695
[JXWR] soil metagenome; rice field; ambient CO2
214
285
+
Arg
TCT
[ENA]
¢þ
>WENV170659557
JXWR01009862
[JXWR] soil metagenome; rice field; ambient CO2
119
46
-
Arg
TCT
[ENA]
¢þ
>WENV170659623
JXWR01015607
[JXWR] soil metagenome; rice field; ambient CO2
2178
2106
-
Arg
TCT
[ENA]
¢þ
>WENV170659642
JXWR01018904
[JXWR] soil metagenome; rice field; ambient CO2
2201
2273
+
Arg
TCT
[ENA]
¢þ
>WENV170659664
JXWR01022404
[JXWR] soil metagenome; rice field; ambient CO2
1837
1765
-
Arg
TCT
[ENA]
¢þ
>WENV170660205
JXWT01029908
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
200
129
-
Arg
TCT
[ENA]
¢þ
>WENV170668481
LAFL01000214
[LAFL] hot springs metagenome; hot springs water enriched for viruses sample NL10_1002_vDNA_WGA
142
214
+
Arg
TCT
[ENA]
¢þ
>FG090100084
CR380949
Ascomycota
Candida glabrata CBS 138 CBS138
376932
377004
+
Arg
TCT
[ENA]
¡û
>FG090100093
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
485731
485803
+
Arg
TCT
[ENA]
¡û
>FG090100100
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
600293
600221
-
Arg
TCT
[ENA]
¡û
>FG090100110
CR380951
Ascomycota
Candida glabrata CBS 138 CBS138
307231
307159
-
Arg
TCT
[ENA]
¡û
>FG090100125
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
591492
591564
+
Arg
TCT
[ENA]
¡û
>FG090100163
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
264246
264174
-
Arg
TCT
[ENA]
¡û
>FG090100196
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
567590
567662
+
Arg
TCT
[ENA]
¡û
>FG090100202
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
1213107
1213179
+
Arg
TCT
[ENA]
¡û
>FG090100227
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
549596
549524
-
Arg
TCT
[ENA]
¡û
>SC0100009
NC_001134
Ascomycota
Saccharomyces cerevisiae S288c
405872
405944
+
Arg
TCT
[ENA]
¡û
>SC0100028
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
568880
568952
+
Arg
TCT
[ENA]
¡û
>SC0100047
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
138665
138738
+
Arg
TCT
[ENA]
¡û
>SC0100072
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
405473
405545
+
Arg
TCT
[ENA]
¡û
>SC0100077
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
736345
736416
+
Arg
TCT
[ENA]
¡û
>SC0100087
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
828799
828727
-
Arg
TCT
[ENA]
¡û
>SC0100115
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
355369
355441
+
Arg
TCT
[ENA]
¡û
>SC0100128
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
374572
374500
-
Arg
TCT
[ENA]
¡û
>SC0100143
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
162563
162492
-
Arg
TCT
[ENA]
¡û
>SC0100165
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
747962
747891
-
Arg
TCT
[ENA]
¡û
>SC0100174
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
131896
131824
-
Arg
TCT
[ENA]
¡û
Identical group No.675939 (12 seq.)
>FG090100010
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
335008
334937
-
Arg
TCT
[ENA]
¡û
>FG090100047
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
959979
960051
+
Arg
TCT
[ENA]
¡û
>FG090100411
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
754419
754347
-
Arg
TCT
[ENA]
¡û
>FG090100432
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
605932
605860
-
Arg
TCT
[ENA]
¡û
>FG090100446
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1212660
1212732
+
Arg
TCT
[ENA]
¡û
>FG090100465
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1035777
1035849
+
Arg
TCT
[ENA]
¡û
>FG090100498
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2001628
2001556
-
Arg
TCT
[ENA]
¡û
>FG091100017
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
471197
471126
-
Arg
TCT
[ENA]
¡û
>FG091100031
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
683890
683819
-
Arg
TCT
[ENA]
¡û
>FG091100049
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1810201
1810128
-
Arg
TCT
[ENA]
¡û
>FG091100059
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
619171
619242
+
Arg
TCT
[ENA]
¡û
>FG091100107
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1032177
1032248
+
Arg
TCT
[ENA]
¡û
Identical group No.757497 (1 seq.)
>FG090100398
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
420025
420097
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK