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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AAG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218453 (12 seq.)
>R05100038
AP008207
Plant
Oryza sativa Japonica Group
42567521
42567604
+
Leu
AAG
[RAP-DB]
¡û
>R05100049
AP008207
Plant
Oryza sativa Japonica Group
42562524
42562441
-
Leu
AAG
[RAP-DB]
¡û
>R05100059
AP008207
Plant
Oryza sativa Japonica Group
36993961
36993876
-
Leu
AAG
[RAP-DB]
¡û
>R05100077
AP008207
Plant
Oryza sativa Japonica Group
14940107
14940024
-
Leu
AAG
[RAP-DB]
¡û
>R05100207
AP008208
Plant
Oryza sativa Japonica Group
19783295
19783212
-
Leu
AAG
[RAP-DB]
¡û
>R05100278
AP008209
Plant
Oryza sativa Japonica Group
10515016
10514933
-
Leu
AAG
[RAP-DB]
¡û
>R05100313
AP008210
Plant
Oryza sativa Japonica Group
19934529
19934612
+
Leu
AAG
[RAP-DB]
¡û
>R05100437
AP008212
Plant
Oryza sativa Japonica Group
25075121
25075038
-
Leu
AAG
[RAP-DB]
¡û
>R05100493
AP008214
Plant
Oryza sativa Japonica Group
4564974
4565057
+
Leu
AAG
[RAP-DB]
¡û
>R05100513
AP008214
Plant
Oryza sativa Japonica Group
27001637
27001720
+
Leu
AAG
[RAP-DB]
¡û
>R05100542
AP008215
Plant
Oryza sativa Japonica Group
20572405
20572488
+
Leu
AAG
[RAP-DB]
¡û
>R05100558
AP008215
Plant
Oryza sativa Japonica Group
10132131
10132048
-
Leu
AAG
[RAP-DB]
¡û
Identical group No.218454 (1 seq.)
>R05100517
AP008214
Plant
Oryza sativa Japonica Group
28407450
28407367
-
Leu
AAG
[RAP-DB]
¡û
Identical group No.222456 (1 seq.)
>R05100001
AP008207
Plant
Oryza sativa Japonica Group
181074
181157
+
Leu
AAG
[RAP-DB]
¡û
Identical group No.222457 (10 seq.)
>AD01000113
NC_003070
Plant
Arabidopsis thaliana
28020463
28020383
-
Leu
AAG
[TAIR]
¡û
>AD01000218
NC_003071
Plant
Arabidopsis thaliana
11115760
11115678
-
Leu
AAG
[TAIR]
¡û
>AD01000222
NC_003071
Plant
Arabidopsis thaliana
9266889
9266809
-
Leu
AAG
[TAIR]
¡û
>AD01000248
NC_003074
Plant
Arabidopsis thaliana
4254528
4254608
+
Leu
AAG
[TAIR]
¡û
>AD01000280
NC_003074
Plant
Arabidopsis thaliana
22611410
22611490
+
Leu
AAG
[TAIR]
¡û
>AD01000323
NC_003075
Plant
Arabidopsis thaliana
7730960
7731042
+
Leu
AAG
[TAIR]
¡û
>AD01000388
NC_003076
Plant
Arabidopsis thaliana
3118377
3118457
+
Leu
AAG
[TAIR]
¡û
>AD01000407
NC_003076
Plant
Arabidopsis thaliana
16410585
16410665
+
Leu
AAG
[TAIR]
¡û
>AD01000431
NC_003076
Plant
Arabidopsis thaliana
25925066
25925146
+
Leu
AAG
[TAIR]
¡û
>AD01000474
NC_003076
Plant
Arabidopsis thaliana
970879
970799
-
Leu
AAG
[TAIR]
¡û
Identical group No.225508 (1 seq.)
>AD01000425
NC_003076
Plant
Arabidopsis thaliana
24262580
24262660
+
Leu
AAG
[TAIR]
¡û
Identical group No.225913 (1 seq.)
>R05100328
AP008210
Plant
Oryza sativa Japonica Group
36029764
36029847
+
Leu
AAG
[RAP-DB]
¡û
Identical group No.772286 (1 seq.)
>AD01000055
NC_003070
Plant
Arabidopsis thaliana
17157360
17157431
+
Leu
AAG
[TAIR]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK