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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TAT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256485 (1 seq.)
>A179000026
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1431030
1430924
-
Ile
TAT
-
¡û
Identical group No.430711 (1 seq.)
>At2115
AE017199
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AE017199]
225624
225716
+
Ile
TAT
[Ensembl]
¡û
Identical group No.563662 (1 seq.)
>A178000660
CP012986
Euryarchaeota
Nanohaloarchaea archaeon SG9 [CP012986]
727326
727126
-
Ile
TAT
-
¡û
Identical group No.727421 (1 seq.)
>A178000517
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
26452
26363
-
Ile
TAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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