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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1002796
SRR002326.22042
281681
Betaproteobacteria
TTT
Lys
>SRA1003262
SRR002326.349191
197278
Betaproteobacteria
CAT
Met
>SRA1003100
SRR002326.199565
290590
Betaproteobacteria
TAC
Val
>SRA1003125
SRR002326.223351
290590
Betaproteobacteria
TAC
Val
>SRA1003037
SRR002326.165342
281431
Betaproteobacteria
GTT
Asn
>SRA1003075
SRR002326.183360
281431
Betaproteobacteria
GTT
Asn
>SRA1003165
SRR002326.264531
281431
Betaproteobacteria
GTT
Asn
>SRA1002976
SRR002326.131361
307931
Betaproteobacteria
TTC
Glu
>SRA1002811
SRR002326.31606
483989
Betaproteobacteria
>SRA1002785
SRR002326.12879
284821
Betaproteobacteria
TTT
Lys
>SRA1003412
SRR002326.451314
118123
Betaproteobacteria
CAG
Leu
>SRA1003348
SRR002326.405318
282941
Betaproteobacteria
TGT
Thr
>SRA1003061
SRR002326.176551
56360
Betaproteobacteria
CGA
Ser
>SRA1002967
SRR002326.128769
414048
Betaproteobacteria
GGT
Thr
>SRA1003147
SRR002326.243107
414048
Betaproteobacteria
GGT
Thr
>SRA1002788
SRR002326.17290
281308
Betaproteobacteria
GAT
Ile
>SRA1003127
SRR002326.226836
188039
Betaproteobacteria
TCT
Arg
>SRA1002902
SRR002326.87648
282942
Betaproteobacteria
CCG
Arg
>SRA1003086
SRR002326.188858
282942
Betaproteobacteria
CCG
Arg
>SRA1003284
SRR002326.365840
282942
Betaproteobacteria
CCG
Arg
>SRA1003290
SRR002326.368462
282942
Betaproteobacteria
CCG
Arg
>SRA1003294
SRR002326.370320
282942
Betaproteobacteria
CCG
Arg
>SRA1003323
SRR002326.390184
282942
Betaproteobacteria
CCG
Arg
>SRA1003502
SRR002326.510757
282942
Betaproteobacteria
CCG
Arg
>SRA1002974
SRR002326.130860
283003
Betaproteobacteria
CCG
Arg
>SRA1003445
SRR002326.473478
283003
Betaproteobacteria
CCG
Arg
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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