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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170279222
CERR01006155
208578
Cyanobacteriota
CGG
Pro
>WENV170279211
CERR01005504
73534
Cyanobacteriota
CAG
Leu
>WENV170279839
CERR01059937
73534
Cyanobacteriota
CAG
Leu
>WENV170279413
CERR01018702
221462
Cyanobacteriota
CCT
Arg
>WENV170279514
CERR01028765
400473
Cyanobacteriota
GAC
Val
>WENV170280032
CERR01084720
14711
Cyanobacteriota
GCT
Ser
>WENV170279303
CERR01011366
292138
Cyanobacteriota
CCA
Trp
>WENV170279548
CERR01031728
228486
Cyanobacteriota
GTC
Asp
>WENV170280186
CERR01103518
343795
Cyanobacteriota
GGC
Ala
>WENV170279941
CERR01074330
343795
Cyanobacteriota
GGC
Ala
>WENV170279430
CERR01020130
16506
Cyanobacteriota
GCT
Ser
>WENV170279683
CERR01045567
400477
Cyanobacteriota
GTT
Asn
>WENV170280280
CERR01113182
400477
Cyanobacteriota
GTT
Asn
>WENV170279189
CERR01003752
178673
Cyanobacteriota
CCG
Arg
>WENV170279546
CERR01031559
178673
Cyanobacteriota
CCG
Arg
>WENV170279603
CERR01038812
73307
Cyanobacteriota
CAG
Leu
>WENV170279357
CERR01014249
176367
Cyanobacteriota
GGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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