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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170187514
CEPA01166238
656944
Gammaproteobacteria
CCT
Arg
>WENV170186874
CEPA01093801
270982
Gammaproteobacteria
GAT
Ile
>WENV170186954
CEPA01102162
270982
Gammaproteobacteria
GAT
Ile
>WENV170187394
CEPA01156149
653834
Gammaproteobacteria
TCC
Gly
>WENV170186638
CEPA01067604
276974
Gammaproteobacteria
GGG
Pro
>WENV170187533
CEPA01168001
458351
Gammaproteobacteria
TTG
Gln
>WENV170186027
CEPA01012191
276971
Gammaproteobacteria
ACG
Arg
>WENV170186028
CEPA01012191
276971
Gammaproteobacteria
ACG
Arg
>WENV170186169
CEPA01023200
452412
Gammaproteobacteria
GCC
Gly
>WENV170186818
CEPA01087419
456510
Gammaproteobacteria
GGC
Ala
>WENV170186193
CEPA01024556
781121
Gammaproteobacteria
GCA
Cys
>WENV170187273
CEPA01143300
456709
Gammaproteobacteria
TGC
Ala
>WENV170187796
CEPA01269580
113485
Gammaproteobacteria
CAA
Leu
>WENV170187798
CEPA01269960
452881
Gammaproteobacteria
TGT
Thr
>WENV170187632
CEPA01173102
276972
Gammaproteobacteria
CCA
Trp
>WENV170187023
CEPA01109956
452414
Gammaproteobacteria
TTC
Glu
>WENV170187856
CEPA01297659
276970
Gammaproteobacteria
CCG
Arg
>WENV170187683
CEPA01200450
30354
Gammaproteobacteria
TGA
Ser
>WENV170187393
CEPA01156149
184132
Gammaproteobacteria
GTA
Tyr
>WENV170186026
CEPA01012191
20134
Gammaproteobacteria
GCT
Ser
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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