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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170822393
MDSY01039480
273797
Alphaproteobacteria
GGG
Pro
>WENV170824207
MDSY01071689
273797
Alphaproteobacteria
GGG
Pro
>WENV170824137
MDSY01070216
452917
Alphaproteobacteria
TAC
Val
>WENV170825795
MDSY01100021
452917
Alphaproteobacteria
TAC
Val
>WENV170824173
MDSY01071053
655421
Alphaproteobacteria
GGT
Thr
>WENV170823076
MDSY01051249
780326
Alphaproteobacteria
CCC
Gly
>WENV170820442
MDSY01004812
653534
Alphaproteobacteria
GCC
Gly
>WENV170826703
MDSY01115362
653534
Alphaproteobacteria
GCC
Gly
>WENV170827646
MDSY01133612
46190
Alphaproteobacteria
GGA
Ser
>WENV170820199
MDSY01000213
276122
Alphaproteobacteria
ACG
Arg
>WENV170821625
MDSY01025090
656001
Alphaproteobacteria
GCC
Gly
>WENV170825907
MDSY01102053
656001
Alphaproteobacteria
GCC
Gly
>WENV170827342
MDSY01127332
656001
Alphaproteobacteria
GCC
Gly
>WENV170821626
MDSY01025090
218119
Alphaproteobacteria
>WENV170823706
MDSY01062300
218119
Alphaproteobacteria
>WENV170827343
MDSY01127332
218119
Alphaproteobacteria
>WENV170827958
MDSY01139540
218119
Alphaproteobacteria
>WENV170825952
MDSY01102566
277700
Alphaproteobacteria
GTG
His
>WENV170823344
MDSY01055598
278344
Alphaproteobacteria
CAT
Met
>WENV170820710
MDSY01009108
653532
Alphaproteobacteria
GTT
Asn
>WENV170823109
MDSY01051641
653532
Alphaproteobacteria
GTT
Asn
>WENV170827050
MDSY01121993
653532
Alphaproteobacteria
GTT
Asn
>WENV170821740
MDSY01027236
654987
Alphaproteobacteria
GAC
Val
>WENV170826977
MDSY01120612
455362
Alphaproteobacteria
TTT
Lys
>WENV170822412
MDSY01039668
779636
Alphaproteobacteria
CTG
Gln
>WENV170827563
MDSY01131684
454059
Alphaproteobacteria
TTT
Lys
>WENV170822752
MDSY01045740
180720
Alphaproteobacteria
TAG
Leu
>WENV170828941
MDSY01158316
275155
Alphaproteobacteria
GGG
Pro
>WENV170825685
MDSY01097886
278722
Alphaproteobacteria
ACG
Arg
>WENV170825372
MDSY01091746
455363
Alphaproteobacteria
GGC
Ala
>WENV170820483
MDSY01005450
275157
Alphaproteobacteria
TGG
Pro
>WENV170824415
MDSY01075420
46222
Alphaproteobacteria
GGA
Ser
>WENV170827844
MDSY01137530
273603
Alphaproteobacteria
TGG
Pro
>WENV170821478
MDSY01022775
275560
Alphaproteobacteria
ACG
Arg
>WENV170824290
MDSY01073149
656140
Alphaproteobacteria
GAC
Val
>WENV170827612
MDSY01132859
656140
Alphaproteobacteria
GAC
Val
>WENV170828044
MDSY01141620
113889
Alphaproteobacteria
CAG
Leu
>WENV170821487
MDSY01022991
780582
Alphaproteobacteria
TCC
Gly
>WENV170820364
MDSY01003443
274225
Alphaproteobacteria
CAT
Met
>WENV170826580
MDSY01113071
274225
Alphaproteobacteria
CAT
Met
>WENV170821526
MDSY01023491
779596
Alphaproteobacteria
TCC
Gly
>WENV170826267
MDSY01108101
658005
Alphaproteobacteria
GCC
Gly
>WENV170828651
MDSY01153919
654995
Alphaproteobacteria
TTG
Gln
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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