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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1007581
SRR020489.108107
277354
Cyanobacteriota
GGG
Pro
>SRA1007658
SRR020489.180244
660981
Cyanobacteriota
TTT
Lys
>SRA1007474
SRR020489.19436
654134
Cyanobacteriota
GTT
Asn
>SRA1007494
SRR020489.35212
654134
Cyanobacteriota
GTT
Asn
>SRA1007565
SRR020489.93922
654134
Cyanobacteriota
GTT
Asn
>SRA1007560
SRR020489.89641
458794
Cyanobacteriota
CAT
Met
>SRA1007607
SRR020489.129427
458794
Cyanobacteriota
CAT
Met
>SRA1007534
SRR020489.70108
657285
Cyanobacteriota
TTG
Gln
>SRA1007603
SRR020489.128270
181165
Cyanobacteriota
TAG
Leu
>SRA1007638
SRR020489.162320
20153
Cyanobacteriota
GCT
Ser
>SRA1007673
SRR020489.192529
20153
Cyanobacteriota
GCT
Ser
>SRA1007547
SRR020489.79790
46559
Cyanobacteriota
GGA
Ser
>SRA1007492
SRR020489.32887
454022
Cyanobacteriota
TGC
Ala
>SRA1007509
SRR020489.45470
48754
Cyanobacteriota
GGA
Ser
>SRA1007540
SRR020489.74484
779735
Cyanobacteriota
TCC
Gly
>SRA1007577
SRR020489.107451
779735
Cyanobacteriota
TCC
Gly
>SRA1007495
SRR020489.36297
277353
Cyanobacteriota
ACG
Arg
>SRA1007559
SRR020489.89069
277353
Cyanobacteriota
ACG
Arg
>SRA1007606
SRR020489.129361
277353
Cyanobacteriota
ACG
Arg
>SRA1007513
SRR020489.46930
657291
Cyanobacteriota
GGT
Thr
>SRA1007588
SRR020489.112792
657291
Cyanobacteriota
GGT
Thr
>SRA1007617
SRR020489.137927
657291
Cyanobacteriota
GGT
Thr
>SRA1007470
SRR020489.12311
455176
Cyanobacteriota
GTG
His
>SRA1007503
SRR020489.41209
455176
Cyanobacteriota
GTG
His
>SRA1007507
SRR020489.44156
455176
Cyanobacteriota
GTG
His
>SRA1007636
SRR020489.161650
455176
Cyanobacteriota
GTG
His
>SRA1007640
SRR020489.164688
455176
Cyanobacteriota
GTG
His
>SRA1007518
SRR020489.51358
181217
Cyanobacteriota
CAA
Leu
>SRA1007555
SRR020489.85641
181217
Cyanobacteriota
CAA
Leu
>SRA1007586
SRR020489.112467
181217
Cyanobacteriota
CAA
Leu
>SRA1007508
SRR020489.45439
272148
Cyanobacteriota
CAT
Met
>SRA1007643
SRR020489.168390
272148
Cyanobacteriota
CAT
Met
>SRA1007486
SRR020489.28106
271967
Cyanobacteriota
GTC
Asp
>SRA1007530
SRR020489.63129
271967
Cyanobacteriota
GTC
Asp
>SRA1007532
SRR020489.65249
271967
Cyanobacteriota
GTC
Asp
>SRA1007545
SRR020489.79633
271967
Cyanobacteriota
GTC
Asp
>SRA1007564
SRR020489.93656
271967
Cyanobacteriota
GTC
Asp
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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