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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
200 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1011618
SRR020493.20880
277354
Cyanobacteriota
GGG
Pro
>SRA1011640
SRR020493.27727
277354
Cyanobacteriota
GGG
Pro
>SRA1011958
SRR020493.134344
277354
Cyanobacteriota
GGG
Pro
>SRA1011994
SRR020493.147331
277354
Cyanobacteriota
GGG
Pro
>SRA1012150
SRR020493.199013
277354
Cyanobacteriota
GGG
Pro
>SRA1012712
SRR020493.403933
277354
Cyanobacteriota
GGG
Pro
>SRA1012842
SRR020493.451305
277354
Cyanobacteriota
GGG
Pro
>SRA1012895
SRR020493.474064
277354
Cyanobacteriota
GGG
Pro
>SRA1011641
SRR020493.28323
654134
Cyanobacteriota
GTT
Asn
>SRA1011753
SRR020493.67274
654134
Cyanobacteriota
GTT
Asn
>SRA1011909
SRR020493.117921
654134
Cyanobacteriota
GTT
Asn
>SRA1012306
SRR020493.255424
654134
Cyanobacteriota
GTT
Asn
>SRA1012384
SRR020493.290460
654134
Cyanobacteriota
GTT
Asn
>SRA1012490
SRR020493.330026
654134
Cyanobacteriota
GTT
Asn
>SRA1012601
SRR020493.365682
654134
Cyanobacteriota
GTT
Asn
>SRA1012549
SRR020493.349353
274045
Cyanobacteriota
GTC
Asp
>SRA1011590
SRR020493.6796
458794
Cyanobacteriota
CAT
Met
>SRA1012107
SRR020493.181625
458794
Cyanobacteriota
CAT
Met
>SRA1012202
SRR020493.213083
458794
Cyanobacteriota
CAT
Met
>SRA1012227
SRR020493.221827
458794
Cyanobacteriota
CAT
Met
>SRA1012510
SRR020493.335295
458794
Cyanobacteriota
CAT
Met
>SRA1012534
SRR020493.342824
458794
Cyanobacteriota
CAT
Met
>SRA1012725
SRR020493.407439
458794
Cyanobacteriota
CAT
Met
>SRA1012797
SRR020493.434080
458794
Cyanobacteriota
CAT
Met
>SRA1012830
SRR020493.445364
458794
Cyanobacteriota
CAT
Met
>SRA1011638
SRR020493.27373
657285
Cyanobacteriota
TTG
Gln
>SRA1011719
SRR020493.56223
657285
Cyanobacteriota
TTG
Gln
>SRA1011770
SRR020493.71843
657285
Cyanobacteriota
TTG
Gln
>SRA1011784
SRR020493.77794
657285
Cyanobacteriota
TTG
Gln
>SRA1012220
SRR020493.218985
657285
Cyanobacteriota
TTG
Gln
>SRA1012672
SRR020493.390083
657285
Cyanobacteriota
TTG
Gln
>SRA1012702
SRR020493.400969
657285
Cyanobacteriota
TTG
Gln
>SRA1012911
SRR020493.479372
657285
Cyanobacteriota
TTG
Gln
>SRA1011732
SRR020493.60230
181218
Cyanobacteriota
GTA
Tyr
>SRA1011921
SRR020493.121306
181218
Cyanobacteriota
GTA
Tyr
>SRA1012042
SRR020493.162908
181218
Cyanobacteriota
GTA
Tyr
>SRA1012118
SRR020493.186479
181218
Cyanobacteriota
GTA
Tyr
>SRA1012161
SRR020493.201792
181218
Cyanobacteriota
GTA
Tyr
>SRA1012222
SRR020493.220069
181218
Cyanobacteriota
GTA
Tyr
>SRA1012274
SRR020493.238746
181218
Cyanobacteriota
GTA
Tyr
>SRA1012358
SRR020493.285285
181218
Cyanobacteriota
GTA
Tyr
>SRA1012553
SRR020493.350175
181218
Cyanobacteriota
GTA
Tyr
>SRA1012651
SRR020493.382277
181218
Cyanobacteriota
GTA
Tyr
>SRA1012741
SRR020493.412830
181218
Cyanobacteriota
GTA
Tyr
>SRA1012917
SRR020493.481187
181218
Cyanobacteriota
GTA
Tyr
>SRA1011612
SRR020493.19236
181165
Cyanobacteriota
TAG
Leu
>SRA1012086
SRR020493.177681
181165
Cyanobacteriota
TAG
Leu
>SRA1012171
SRR020493.204530
181165
Cyanobacteriota
TAG
Leu
>SRA1012241
SRR020493.227711
181165
Cyanobacteriota
TAG
Leu
>SRA1012250
SRR020493.231384
181165
Cyanobacteriota
TAG
Leu
>SRA1012476
SRR020493.324532
181165
Cyanobacteriota
TAG
Leu
>SRA1012477
SRR020493.324981
181165
Cyanobacteriota
TAG
Leu
>SRA1012515
SRR020493.336961
181165
Cyanobacteriota
TAG
Leu
>SRA1012636
SRR020493.378692
181165
Cyanobacteriota
TAG
Leu
>SRA1012748
SRR020493.416160
181165
Cyanobacteriota
TAG
Leu
>SRA1012876
SRR020493.464904
181165
Cyanobacteriota
TAG
Leu
>SRA1011620
SRR020493.23227
20153
Cyanobacteriota
GCT
Ser
>SRA1011850
SRR020493.96776
20153
Cyanobacteriota
GCT
Ser
>SRA1011925
SRR020493.122790
20153
Cyanobacteriota
GCT
Ser
>SRA1011927
SRR020493.122997
20153
Cyanobacteriota
GCT
Ser
>SRA1011935
SRR020493.125988
20153
Cyanobacteriota
GCT
Ser
>SRA1012156
SRR020493.200869
20153
Cyanobacteriota
GCT
Ser
>SRA1012244
SRR020493.228912
20153
Cyanobacteriota
GCT
Ser
>SRA1012517
SRR020493.337167
20153
Cyanobacteriota
GCT
Ser
>SRA1012522
SRR020493.339198
20153
Cyanobacteriota
GCT
Ser
>SRA1012614
SRR020493.370324
20153
Cyanobacteriota
GCT
Ser
>SRA1012715
SRR020493.404683
20153
Cyanobacteriota
GCT
Ser
>SRA1012798
SRR020493.434337
20153
Cyanobacteriota
GCT
Ser
>SRA1011928
SRR020493.123009
46559
Cyanobacteriota
GGA
Ser
>SRA1012040
SRR020493.162253
46559
Cyanobacteriota
GGA
Ser
>SRA1012138
SRR020493.194268
46559
Cyanobacteriota
GGA
Ser
>SRA1012182
SRR020493.208241
46559
Cyanobacteriota
GGA
Ser
>SRA1012293
SRR020493.247641
46559
Cyanobacteriota
GGA
Ser
>SRA1012350
SRR020493.280230
46559
Cyanobacteriota
GGA
Ser
>SRA1012402
SRR020493.296808
46559
Cyanobacteriota
GGA
Ser
>SRA1012462
SRR020493.321899
46559
Cyanobacteriota
GGA
Ser
>SRA1012537
SRR020493.344467
46559
Cyanobacteriota
GGA
Ser
>SRA1012714
SRR020493.404422
46559
Cyanobacteriota
GGA
Ser
>SRA1012759
SRR020493.419461
46559
Cyanobacteriota
GGA
Ser
>SRA1011605
SRR020493.16280
46559
Cyanobacteriota
GGA
Ser
>SRA1011626
SRR020493.24098
46559
Cyanobacteriota
GGA
Ser
>SRA1011653
SRR020493.33073
46559
Cyanobacteriota
GGA
Ser
>SRA1011681
SRR020493.43245
46559
Cyanobacteriota
GGA
Ser
>SRA1011846
SRR020493.95137
46559
Cyanobacteriota
GGA
Ser
>SRA1011669
SRR020493.38346
454022
Cyanobacteriota
TGC
Ala
>SRA1011697
SRR020493.47823
454022
Cyanobacteriota
TGC
Ala
>SRA1011817
SRR020493.86286
454022
Cyanobacteriota
TGC
Ala
>SRA1011864
SRR020493.100371
454022
Cyanobacteriota
TGC
Ala
>SRA1012103
SRR020493.180528
454022
Cyanobacteriota
TGC
Ala
>SRA1012450
SRR020493.317323
454022
Cyanobacteriota
TGC
Ala
>SRA1012457
SRR020493.320172
454022
Cyanobacteriota
TGC
Ala
>SRA1012544
SRR020493.346880
454022
Cyanobacteriota
TGC
Ala
>SRA1012598
SRR020493.364606
454022
Cyanobacteriota
TGC
Ala
>SRA1012634
SRR020493.378075
454022
Cyanobacteriota
TGC
Ala
>SRA1012641
SRR020493.380020
454022
Cyanobacteriota
TGC
Ala
>SRA1011720
SRR020493.56361
779735
Cyanobacteriota
TCC
Gly
>SRA1011923
SRR020493.121721
779735
Cyanobacteriota
TCC
Gly
>SRA1011987
SRR020493.144242
779735
Cyanobacteriota
TCC
Gly
>SRA1012056
SRR020493.169041
779735
Cyanobacteriota
TCC
Gly
>SRA1012192
SRR020493.209977
779735
Cyanobacteriota
TCC
Gly
>SRA1012226
SRR020493.221651
779735
Cyanobacteriota
TCC
Gly
>SRA1012327
SRR020493.268689
779735
Cyanobacteriota
TCC
Gly
>SRA1012333
SRR020493.272463
779735
Cyanobacteriota
TCC
Gly
>SRA1012690
SRR020493.397239
779735
Cyanobacteriota
TCC
Gly
>SRA1012874
SRR020493.464275
779735
Cyanobacteriota
TCC
Gly
>SRA1012929
SRR020493.486658
779735
Cyanobacteriota
TCC
Gly
>SRA1011746
SRR020493.66711
277353
Cyanobacteriota
ACG
Arg
>SRA1011778
SRR020493.75343
277353
Cyanobacteriota
ACG
Arg
>SRA1011820
SRR020493.87048
277353
Cyanobacteriota
ACG
Arg
>SRA1012417
SRR020493.303818
277353
Cyanobacteriota
ACG
Arg
>SRA1012501
SRR020493.332648
277353
Cyanobacteriota
ACG
Arg
>SRA1012743
SRR020493.413302
277353
Cyanobacteriota
ACG
Arg
>SRA1011771
SRR020493.71952
657291
Cyanobacteriota
GGT
Thr
>SRA1011810
SRR020493.84901
657291
Cyanobacteriota
GGT
Thr
>SRA1011922
SRR020493.121306
657291
Cyanobacteriota
GGT
Thr
>SRA1012235
SRR020493.226084
657291
Cyanobacteriota
GGT
Thr
>SRA1012264
SRR020493.236018
657291
Cyanobacteriota
GGT
Thr
>SRA1012275
SRR020493.238746
657291
Cyanobacteriota
GGT
Thr
>SRA1012347
SRR020493.279667
657291
Cyanobacteriota
GGT
Thr
>SRA1012359
SRR020493.285285
657291
Cyanobacteriota
GGT
Thr
>SRA1012461
SRR020493.321888
657291
Cyanobacteriota
GGT
Thr
>SRA1012646
SRR020493.381368
657291
Cyanobacteriota
GGT
Thr
>SRA1012918
SRR020493.481187
657291
Cyanobacteriota
GGT
Thr
>SRA1011598
SRR020493.14087
455176
Cyanobacteriota
GTG
His
>SRA1011600
SRR020493.15384
455176
Cyanobacteriota
GTG
His
>SRA1011635
SRR020493.26067
455176
Cyanobacteriota
GTG
His
>SRA1011637
SRR020493.26791
455176
Cyanobacteriota
GTG
His
>SRA1011679
SRR020493.42109
455176
Cyanobacteriota
GTG
His
>SRA1011723
SRR020493.57680
455176
Cyanobacteriota
GTG
His
>SRA1011736
SRR020493.62009
455176
Cyanobacteriota
GTG
His
>SRA1011767
SRR020493.70124
455176
Cyanobacteriota
GTG
His
>SRA1011877
SRR020493.103829
455176
Cyanobacteriota
GTG
His
>SRA1011910
SRR020493.118153
455176
Cyanobacteriota
GTG
His
>SRA1011963
SRR020493.135647
455176
Cyanobacteriota
GTG
His
>SRA1012076
SRR020493.174511
455176
Cyanobacteriota
GTG
His
>SRA1012165
SRR020493.202777
455176
Cyanobacteriota
GTG
His
>SRA1012420
SRR020493.306795
455176
Cyanobacteriota
GTG
His
>SRA1012454
SRR020493.319684
455176
Cyanobacteriota
GTG
His
>SRA1012469
SRR020493.323377
455176
Cyanobacteriota
GTG
His
>SRA1012603
SRR020493.366240
455176
Cyanobacteriota
GTG
His
>SRA1012609
SRR020493.368992
455176
Cyanobacteriota
GTG
His
>SRA1012678
SRR020493.393714
455176
Cyanobacteriota
GTG
His
>SRA1012685
SRR020493.395679
455176
Cyanobacteriota
GTG
His
>SRA1012763
SRR020493.420488
455176
Cyanobacteriota
GTG
His
>SRA1011750
SRR020493.67031
73049
Cyanobacteriota
TAA
Leu
>SRA1011980
SRR020493.142225
73049
Cyanobacteriota
TAA
Leu
>SRA1012121
SRR020493.186719
73049
Cyanobacteriota
TAA
Leu
>SRA1012126
SRR020493.189038
73049
Cyanobacteriota
TAA
Leu
>SRA1012144
SRR020493.195538
73049
Cyanobacteriota
TAA
Leu
>SRA1012367
SRR020493.286709
73049
Cyanobacteriota
TAA
Leu
>SRA1012716
SRR020493.404993
73049
Cyanobacteriota
TAA
Leu
>SRA1012879
SRR020493.465484
73049
Cyanobacteriota
TAA
Leu
>SRA1011776
SRR020493.74811
46524
Cyanobacteriota
TGA
Ser
>SRA1012035
SRR020493.159984
46524
Cyanobacteriota
TGA
Ser
>SRA1012070
SRR020493.172796
46524
Cyanobacteriota
TGA
Ser
>SRA1012073
SRR020493.173564
46524
Cyanobacteriota
TGA
Ser
>SRA1012172
SRR020493.205244
46524
Cyanobacteriota
TGA
Ser
>SRA1012316
SRR020493.263224
46524
Cyanobacteriota
TGA
Ser
>SRA1012466
SRR020493.322711
46524
Cyanobacteriota
TGA
Ser
>SRA1012486
SRR020493.328804
46524
Cyanobacteriota
TGA
Ser
>SRA1012721
SRR020493.406834
46524
Cyanobacteriota
TGA
Ser
>SRA1012828
SRR020493.443907
46524
Cyanobacteriota
TGA
Ser
>SRA1011702
SRR020493.48859
181217
Cyanobacteriota
CAA
Leu
>SRA1011725
SRR020493.58002
181217
Cyanobacteriota
CAA
Leu
>SRA1011881
SRR020493.105741
181217
Cyanobacteriota
CAA
Leu
>SRA1011896
SRR020493.115398
181217
Cyanobacteriota
CAA
Leu
>SRA1012004
SRR020493.151024
181217
Cyanobacteriota
CAA
Leu
>SRA1012096
SRR020493.179355
181217
Cyanobacteriota
CAA
Leu
>SRA1012106
SRR020493.181343
181217
Cyanobacteriota
CAA
Leu
>SRA1012270
SRR020493.237565
181217
Cyanobacteriota
CAA
Leu
>SRA1012313
SRR020493.261491
181217
Cyanobacteriota
CAA
Leu
>SRA1012530
SRR020493.341840
181217
Cyanobacteriota
CAA
Leu
>SRA1012582
SRR020493.360121
181217
Cyanobacteriota
CAA
Leu
>SRA1012810
SRR020493.439301
181217
Cyanobacteriota
CAA
Leu
>SRA1011656
SRR020493.34644
458795
Cyanobacteriota
GGC
Ala
>SRA1011884
SRR020493.109745
458795
Cyanobacteriota
GGC
Ala
>SRA1011956
SRR020493.133582
458795
Cyanobacteriota
GGC
Ala
>SRA1011722
SRR020493.57152
272148
Cyanobacteriota
CAT
Met
>SRA1011913
SRR020493.119087
272148
Cyanobacteriota
CAT
Met
>SRA1011937
SRR020493.126714
272148
Cyanobacteriota
CAT
Met
>SRA1012015
SRR020493.155055
272148
Cyanobacteriota
CAT
Met
>SRA1012047
SRR020493.164376
272148
Cyanobacteriota
CAT
Met
>SRA1012317
SRR020493.263438
272148
Cyanobacteriota
CAT
Met
>SRA1012328
SRR020493.268920
272148
Cyanobacteriota
CAT
Met
>SRA1012407
SRR020493.300814
272148
Cyanobacteriota
CAT
Met
>SRA1012649
SRR020493.382070
272148
Cyanobacteriota
CAT
Met
>SRA1012689
SRR020493.397166
272148
Cyanobacteriota
CAT
Met
>SRA1012912
SRR020493.479580
272148
Cyanobacteriota
CAT
Met
>SRA1011588
SRR020493.6128
271967
Cyanobacteriota
GTC
Asp
>SRA1011796
SRR020493.81810
271967
Cyanobacteriota
GTC
Asp
>SRA1011874
SRR020493.103239
271967
Cyanobacteriota
GTC
Asp
>SRA1012085
SRR020493.177374
271967
Cyanobacteriota
GTC
Asp
>SRA1012194
SRR020493.210536
271967
Cyanobacteriota
GTC
Asp
>SRA1012260
SRR020493.234537
271967
Cyanobacteriota
GTC
Asp
>SRA1012262
SRR020493.235212
271967
Cyanobacteriota
GTC
Asp
>SRA1012323
SRR020493.266387
271967
Cyanobacteriota
GTC
Asp
>SRA1012499
SRR020493.332372
271967
Cyanobacteriota
GTC
Asp
>SRA1012660
SRR020493.387509
271967
Cyanobacteriota
GTC
Asp
>SRA1012729
SRR020493.409928
271967
Cyanobacteriota
GTC
Asp
>SRA1012747
SRR020493.415035
271967
Cyanobacteriota
GTC
Asp
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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