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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170712933
LNFM01020787
235615
Actinomycetota
TGC
Ala
>WENV170714350
LNFM01069262
235606
Actinomycetota
GGT
Thr
>WENV170713521
LNFM01033710
343516
Actinomycetota
CCT
Arg
>WENV170713174
LNFM01025534
45128
Actinomycetota
GGA
Ser
>WENV170712252
LNFM01011328
95968
Actinomycetota
TAG
Leu
>WENV170712522
LNFM01014285
146611
Actinomycetota
CGG
Pro
>WENV170713312
LNFM01028536
146607
Actinomycetota
GTC
Asp
>WENV170714258
LNFM01064093
239148
Actinomycetota
GTG
His
>WENV170713122
LNFM01024256
10624
Actinomycetota
GCT
Ser
>WENV170714617
LNFM01086992
153188
Actinomycetota
CAT
Met
>WENV170713873
LNFM01045232
62910
Actinomycetota
CAG
Leu
>WENV170711957
LNFM01008636
248046
Actinomycetota
CCA
Trp
>WENV170712968
LNFM01021440
237116
Actinomycetota
CGT
Thr
>WENV170713123
LNFM01024256
246365
Actinomycetota
ACG
Arg
>WENV170712701
LNFM01016739
251503
Actinomycetota
GTT
Asn
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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