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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1004819
SRR006906.146503
65708
Bacteroidota
GCT
Ser
>SRA1004811
SRR006906.144061
61365
Bacteroidota
TGA
Ser
>SRA1004996
SRR006906.215073
328225
Bacteroidota
GAA
Phe
>SRA1004690
SRR006906.103022
257181
Bacteroidota
TTT
Lys
>SRA1004917
SRR006906.184152
257181
Bacteroidota
TTT
Lys
>SRA1004734
SRR006906.118160
41177
Bacteroidota
TAA
Leu
>SRA1004820
SRR006906.147593
41177
Bacteroidota
TAA
Leu
>SRA1004757
SRR006906.125588
138865
Bacteroidota
>SRA1004359
SRR006906.9820
160921
Bacteroidota
TCG
Arg
>SRA1004948
SRR006906.194189
160921
Bacteroidota
TCG
Arg
>SRA1004884
SRR006906.170587
158533
Bacteroidota
TGT
Thr
>SRA1004775
SRR006906.134338
42825
Bacteroidota
TAA
Leu
>SRA1004407
SRR006906.23050
162242
Bacteroidota
GAT
Ile
>SRA1004652
SRR006906.95132
162242
Bacteroidota
GAT
Ile
>SRA1004970
SRR006906.202495
162242
Bacteroidota
GAT
Ile
>SRA1004400
SRR006906.20484
268445
Bacteroidota
GAA
Phe
>SRA1004504
SRR006906.53550
268445
Bacteroidota
GAA
Phe
>SRA1004642
SRR006906.93029
268445
Bacteroidota
GAA
Phe
>SRA1005068
SRR006906.251114
268445
Bacteroidota
GAA
Phe
>SRA1004899
SRR006906.176118
124574
Bacteroidota
GTA
Tyr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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