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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV171002939
NJIW01001288
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
1
87
+
Leu
CAA
[ENA]
¢þ
>WENV171002963
NJIW01004983
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
48
122
+
Arg
TCT
[ENA]
¢þ
>WENV171002957
NJIW01004042
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
48
124
+
Arg
ACG
[ENA]
¢þ
>WENV171002964
NJIW01005129
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
61
137
+
Thr
TGT
[ENA]
¢þ
>WENV171002943
NJIW01001779
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
69
143
+
Glu
TTC
[ENA]
¢þ
>WENV171002945
NJIW01002071
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
75
1
-
Asn
GTT
[ENA]
¢þ
>WENV171002961
NJIW01004637
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
75
4
-
Gly
CCC
[ENA]
¢þ
>WENV171002947
NJIW01002514
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
87
14
-
Gln
TTG
[ENA]
¢þ
>WENV171002958
NJIW01004242
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
123
196
+
His
GTG
[ENA]
¢þ
>WENV171002938
NJIW01001158
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
142
53
-
Ser
GGA
[ENA]
¢þ
>WENV171002951
NJIW01003143
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
159
231
+
Ala
GGC
[ENA]
¢þ
>WENV171002965
NJIW01005442
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
176
95
-
Leu
CAA
[ENA]
¢þ
>WENV171002956
NJIW01003972
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
181
97
-
Tyr
GTA
[ENA]
¢þ
>WENV171002944
NJIW01001812
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
186
261
+
Val
TAC
[ENA]
¢þ
>WENV171002962
NJIW01004802
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
209
280
+
Gly
GCC
[ENA]
¢þ
>WENV171002949
NJIW01002931
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
223
139
-
Leu
GAG
[ENA]
¢þ
>WENV171002950
NJIW01002996
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
293
212
-
Leu
GAG
[ENA]
¢þ
>WENV171002952
NJIW01003302
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
367
292
-
Thr
TGT
[ENA]
¢þ
>WENV171002959
NJIW01004244
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
387
314
-
Pro
CGG
[ENA]
¢þ
>WENV171002932
NJIW01000035
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
398
483
+
Ser
TGA
[ENA]
¢þ
>WENV171002948
NJIW01002645
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
404
479
+
Thr
CGT
[ENA]
¢þ
>WENV171002960
NJIW01004573
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
421
496
+
Phe
GAA
[ENA]
¢þ
>WENV171002942
NJIW01001711
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
488
416
-
Thr
CGT
[ENA]
¢þ
>WENV171002946
NJIW01002295
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
585
511
-
Val
CAC
[ENA]
¢þ
>WENV171002941
NJIW01001516
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
666
593
-
Val
GAC
[ENA]
¢þ
>WENV171002936
NJIW01001023
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
747
675
-
Thr
TGT
[ENA]
¢þ
>WENV171002940
NJIW01001384
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
1133
1220
+
Leu
CAG
[ENA]
¢þ
>WENV171002955
NJIW01003863
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
1463
1537
+
Trp
CCA
[ENA]
¢þ
>WENV171002937
NJIW01001060
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
1513
1438
-
Pro
GGG
[ENA]
¢þ
>WENV171002954
NJIW01003552
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
1931
1858
-
Pro
TGG
[ENA]
¢þ
>WENV171002934
NJIW01000609
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
1979
2049
+
Cys
GCA
[ENA]
¢þ
>WENV171002953
NJIW01003480
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
2289
2363
+
Arg
CCG
[ENA]
¢þ
>WENV171002933
NJIW01000073
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
2534
2605
+
Lys
TTT
[ENA]
¢þ
>WENV171002935
NJIW01000885
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
2601
2529
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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