This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241252 (87 seq.)
>A171003606
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1035206
1035131
-
Arg
TCT
-
¡û
>A171004538
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
1967407
1967332
-
Arg
TCT
-
¡û
>A171004588
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
2081982
2082057
+
Arg
TCT
-
¡û
>A171004628
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
2528938
2529013
+
Arg
TCT
-
¡û
>A171004684
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
3594279
3594204
-
Arg
TCT
-
¡û
>A171004793
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
4575289
4575215
-
Arg
TCT
-
¡û
>A171004846
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
4520329
4520255
-
Arg
TCT
-
¡û
>A171004903
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
4972944
4972870
-
Arg
TCT
-
¡û
>A171004929
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
338532
338607
+
Arg
TCT
-
¡û
>A171004981
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
338101
338176
+
Arg
TCT
-
¡û
>A171005033
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
333968
334043
+
Arg
TCT
-
¡û
>A171005085
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
333582
333657
+
Arg
TCT
-
¡û
>A171005138
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
342958
343033
+
Arg
TCT
-
¡û
>A171005242
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
433284
433359
+
Arg
TCT
-
¡û
>A171005316
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
4092187
4092262
+
Arg
TCT
-
¡û
>A171005423
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
3713011
3712936
-
Arg
TCT
-
¡û
>A171005479
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
3692719
3692644
-
Arg
TCT
-
¡û
>A171005553
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
497702
497627
-
Arg
TCT
-
¡û
>WENV180345580
OBLN01000768
[OBLN] sediment metagenome; sediment
3655
3580
-
Arg
TCT
[ENA]
¢þ
>WENV170008188
AMZC01003983
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
18991
18916
-
Arg
TCT
[ENA]
¢þ
>At1429
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
5354680
5354606
-
Arg
TCT
[Ensembl]
¡û
>At1436
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
693337
693411
+
Arg
TCT
[Ensembl]
¡û
>At1534
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
1220555
1220481
-
Arg
TCT
[Ensembl]
¡û
>WENV170685690
LFRM01104515
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
117675
117600
-
Arg
TCT
[ENA]
¢þ
>WENV170719624
LSQX01120940
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3893
3818
-
Arg
TCT
[ENA]
¢þ
>W1910230869
FPAO01000001
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
219876
219951
+
Arg
TCT
[ENA]
¡û
>W1910569242
JJOR01000084
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
68283
68208
-
Arg
TCT
[ENA]
¡û
>W1910569287
JJOS01000022
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
53119
53194
+
Arg
TCT
[ENA]
¡û
>W1910569349
JJOT01000048
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910569428
JJOU01000232
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
2984
2909
-
Arg
TCT
[ENA]
¡û
>W1910569699
JJPA01000076
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
1842
1767
-
Arg
TCT
[ENA]
¡û
>W1910569777
JJPB01000131
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
114864
114939
+
Arg
TCT
[ENA]
¡û
>W1910569816
JJPC01000080
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
29651
29726
+
Arg
TCT
[ENA]
¡û
>W1910569862
JJPD01000131
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
2984
2909
-
Arg
TCT
[ENA]
¡û
>W1910569935
JJPE01000167
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
2984
2909
-
Arg
TCT
[ENA]
¡û
>W1910569954
JJPF01000038
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
2984
2909
-
Arg
TCT
[ENA]
¡û
>W1910570015
JJPG01000089
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
2984
2909
-
Arg
TCT
[ENA]
¡û
>W1910570083
JJPH01000120
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
115907
115982
+
Arg
TCT
[ENA]
¡û
>W1910570097
JJPI01000015
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
91860
91935
+
Arg
TCT
[ENA]
¡û
>W1910570190
JJPJ01000144
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
3210
3135
-
Arg
TCT
[ENA]
¡û
>W1910570203
JJPK01000014
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
173464
173389
-
Arg
TCT
[ENA]
¡û
>W1910570276
JJPL01000127
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
29666
29741
+
Arg
TCT
[ENA]
¡û
>W1910570336
JJPM01000268
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
1842
1767
-
Arg
TCT
[ENA]
¡û
>W1910570354
JJPN01000031
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
2984
2909
-
Arg
TCT
[ENA]
¡û
>W1910570399
JJPO01000009
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
2984
2909
-
Arg
TCT
[ENA]
¡û
>W1910570458
JJPP01000037
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
104702
104777
+
Arg
TCT
[ENA]
¡û
>W1910570541
JJPQ01000175
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
1524
1599
+
Arg
TCT
[ENA]
¡û
>W1910570550
JJPR01000019
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
2982
2907
-
Arg
TCT
[ENA]
¡û
>W1910570613
JJPS01000080
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
2982
2907
-
Arg
TCT
[ENA]
¡û
>W1910570689
JJPT01000148
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
1073
998
-
Arg
TCT
[ENA]
¡û
>W1910570736
JJPU01000154
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
91896
91971
+
Arg
TCT
[ENA]
¡û
>W1910570781
JJPV01000076
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
91250
91325
+
Arg
TCT
[ENA]
¡û
>W1910570844
JJPW01000105
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
91719
91794
+
Arg
TCT
[ENA]
¡û
>W1910570883
JJPX01000114
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
63789
63714
-
Arg
TCT
[ENA]
¡û
>W1910570907
JJPY01000016
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
116022
116097
+
Arg
TCT
[ENA]
¡û
>W1910570979
JJPZ01000101
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
92217
92292
+
Arg
TCT
[ENA]
¡û
>W1910571004
JJQA01000010
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
128794
128869
+
Arg
TCT
[ENA]
¡û
>W1910571100
JJQB01000140
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
121662
121737
+
Arg
TCT
[ENA]
¡û
>W1910571103
JJQC01000005
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
128779
128854
+
Arg
TCT
[ENA]
¡û
>W1910571180
JJQD01000142
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
29581
29656
+
Arg
TCT
[ENA]
¡û
>W1910571203
JJQE01000017
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
11499
11574
+
Arg
TCT
[ENA]
¡û
>W1910571282
JJQF01000095
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
120873
120948
+
Arg
TCT
[ENA]
¡û
>W1910571317
JJQG01000075
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910571402
JJQH01000199
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910571408
JJQI01000004
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
139342
139417
+
Arg
TCT
[ENA]
¡û
>W1910571491
JJQJ01000153
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910571512
JJQK01000028
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
29894
29819
-
Arg
TCT
[ENA]
¡û
>W1910571620
JJQM01000037
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910571692
JJQN01000055
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
1527
1602
+
Arg
TCT
[ENA]
¡û
>W1910571748
JJQO01000063
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910571841
JJQP01000287
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910571851
JJQQ01000002
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
3130
3055
-
Arg
TCT
[ENA]
¡û
>W1910571925
JJQR01000079
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
73920
73845
-
Arg
TCT
[ENA]
¡û
>W1910571956
JJQS01000023
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910572028
JJQT01000138
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910572097
JJQU01000252
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
53030
53105
+
Arg
TCT
[ENA]
¡û
>W1910572108
JJQV01000026
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910572177
JJQW01000088
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910572214
JJQX01000053
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910572321
JJQZ01000083
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910572373
JJRA01000082
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910572407
JJRB01000042
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
2986
2911
-
Arg
TCT
[ENA]
¡û
>W1910575078
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
549209
549134
-
Arg
TCT
[ENA]
¡û
>W1910635254
LMVP01000223
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
36001
36076
+
Arg
TCT
[ENA]
¡û
>W1610000004
AAAR03000001
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
573686
573761
+
Arg
TCT
[ENA]
¡û
>W1610605095
LFRP01000015
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
117675
117600
-
Arg
TCT
[ENA]
¡û
>W1610670274
LKAZ01000057
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
225833
225908
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK