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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281596 (46 seq.)
>W1711065157
LSBO01000097
Bacillota
Candidatus Frackibacter sp. T328-2 T328-2 [LSBO]
383
308
-
Val
TAC
[ENA]
¡û
>W131163397
AQZS01000005
Bacillota
Orenia marismortui DSM 5156 [AQZS]
78179
78254
+
Val
TAC
[ENA]
¡û
>W131163418
AQZS01000014
Bacillota
Orenia marismortui DSM 5156 [AQZS]
16963
16888
-
Val
TAC
[ENA]
¡û
>W131163433
AQZS01000017
Bacillota
Orenia marismortui DSM 5156 [AQZS]
49563
49638
+
Val
TAC
[ENA]
¡û
>W131163442
AQZS01000019
Bacillota
Orenia marismortui DSM 5156 [AQZS]
562
637
+
Val
TAC
[ENA]
¡û
>W1711174019
LWDV01000005
Bacillota
Orenia metallireducens [LWDV]
117258
117333
+
Val
TAC
[ENA]
¡û
>W1711174030
LWDV01000007
Bacillota
Orenia metallireducens [LWDV]
29900
29825
-
Val
TAC
[ENA]
¡û
>w015312
AAOZ01000021
Bacillota
Halothermothrix orenii H 168 [AAOZ]
33581
33504
-
Val
TAC
[ENA]
¡û
>WENV180097075
MTBK01166428
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
671
746
+
Val
TAC
[ENA]
¢þ
>WENV170563207
CZCB01011987
[CZCB] anaerobic digester metagenome; anaerobic digester
12324
12249
-
Val
TAC
[ENA]
¢þ
>WENV170674732
LCWY01001066
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
2269
2194
-
Val
TAC
[ENA]
¢þ
>WENV170674804
LCWY01004903
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
867
792
-
Val
TAC
[ENA]
¢þ
>WENV170674889
LCWY01018670
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
121
46
-
Val
TAC
[ENA]
¢þ
>WENV170675383
LCWZ01057228
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
76
1
-
Val
TAC
[ENA]
¢þ
>WENV170675395
LCWZ01058925
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
212
137
-
Val
TAC
[ENA]
¢þ
>WENV170684893
LFRM01063662
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
32288
32363
+
Val
TAC
[ENA]
¢þ
>WENV170689981
LFRM01320192
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
149
74
-
Val
TAC
[ENA]
¢þ
>C09106578
CP001098
Bacillota
Halothermothrix orenii H 168 H 168; DSM 9562 [CP001098]
25442
25517
+
Val
TAC
[Ensembl]
¡û
>C09106589
CP001098
Bacillota
Halothermothrix orenii H 168 H 168; DSM 9562 [CP001098]
604437
604512
+
Val
TAC
[Ensembl]
¡û
>W1911492580
OBDZ01000003
Bacillota
Orenia metallireducens MSL47 [OBDZ]
161248
161173
-
Val
TAC
[ENA]
¡û
>W1911492587
OBDZ01000004
Bacillota
Orenia metallireducens MSL47 [OBDZ]
85398
85323
-
Val
TAC
[ENA]
¡û
>W1911492593
OBDZ01000007
Bacillota
Orenia metallireducens MSL47 [OBDZ]
161864
161789
-
Val
TAC
[ENA]
¡û
>W1911492602
OBDZ01000010
Bacillota
Orenia metallireducens MSL47 [OBDZ]
102118
102193
+
Val
TAC
[ENA]
¡û
>W1911492646
OBDZ01000090
Bacillota
Orenia metallireducens MSL47 [OBDZ]
813
738
-
Val
TAC
[ENA]
¡û
>W1810356586
PVNB01000001
Bacillota
Orenia metallireducens MSL40 [PVNB]
54653
54728
+
Val
TAC
[ENA]
¡û
>W1810356602
PVNB01000005
Bacillota
Orenia metallireducens MSL40 [PVNB]
85139
85064
-
Val
TAC
[ENA]
¡û
>W1810356612
PVNB01000007
Bacillota
Orenia metallireducens MSL40 [PVNB]
161851
161776
-
Val
TAC
[ENA]
¡û
>W1810356645
PVNB01000022
Bacillota
Orenia metallireducens MSL40 [PVNB]
34086
34161
+
Val
TAC
[ENA]
¡û
>C131003421
CP003359
Bacillota
Halobacteroides halobius DSM 5150 [CP003359]
20664
20739
+
Val
TAC
[Ensembl]
¡û
>C131003440
CP003359
Bacillota
Halobacteroides halobius DSM 5150 [CP003359]
465148
465223
+
Val
TAC
[Ensembl]
¡û
>C131003465
CP003359
Bacillota
Halobacteroides halobius DSM 5150 [CP003359]
1826323
1826248
-
Val
TAC
[Ensembl]
¡û
>C131003476
CP003359
Bacillota
Halobacteroides halobius DSM 5150 [CP003359]
1825187
1825112
-
Val
TAC
[Ensembl]
¡û
>W1610606046
LFSN01000029
Bacillota
Clostridia bacterium DTU030 [LFSN]
32288
32363
+
Val
TAC
[ENA]
¡û
>W1610905946
LSBO01000097
Bacillota
Candidatus Frackibacter sp. T328-2 T328-2 [LSBO]
383
308
-
Val
TAC
[ENA]
¡û
>W1610982483
LWDV01000005
Bacillota
Orenia metallireducens [LWDV]
117258
117333
+
Val
TAC
[ENA]
¡û
>W1610982494
LWDV01000007
Bacillota
Orenia metallireducens [LWDV]
29900
29825
-
Val
TAC
[ENA]
¡û
>W1710512890
FMZT01000007
Bacillota
Candidatus Frackibacter sp. WG11 alkaliacetigena [FMZT]
104409
104334
-
Val
TAC
[ENA]
¡û
>W1710512901
FMZT01000010
Bacillota
Candidatus Frackibacter sp. WG11 alkaliacetigena [FMZT]
69550
69625
+
Val
TAC
[ENA]
¡û
>W1710546176
FOCA01000007
Bacillota
Candidatus Frackibacter sp. WG12 alkaliacetigena [FOCA]
145
220
+
Val
TAC
[ENA]
¡û
>W1710546187
FOCA01000010
Bacillota
Candidatus Frackibacter sp. WG12 alkaliacetigena [FOCA]
70107
70182
+
Val
TAC
[ENA]
¡û
>W1710568630
FOTT01000009
Bacillota
Candidatus Frackibacter sp. WG13 alkaliacetigena [FOTT]
21536
21461
-
Val
TAC
[ENA]
¡û
>W1710568635
FOTT01000010
Bacillota
Candidatus Frackibacter sp. WG13 alkaliacetigena [FOTT]
90524
90449
-
Val
TAC
[ENA]
¡û
>W1710600466
FUWM01000005
Bacillota
Selenihalanaerobacter shriftii [FUWM]
986
1061
+
Val
TAC
[ENA]
¡û
>W1710600486
FUWM01000015
Bacillota
Selenihalanaerobacter shriftii [FUWM]
67900
67975
+
Val
TAC
[ENA]
¡û
>W1710600497
FUWM01000027
Bacillota
Selenihalanaerobacter shriftii [FUWM]
27307
27232
-
Val
TAC
[ENA]
¡û
>W1710727333
LFSN01000029
Bacillota
Clostridia bacterium DTU030 [LFSN]
32288
32363
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK