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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288022 (9 seq.)
>WENV181693724
OGPA01056870
[OGPA] human gut metagenome; faeces
227
152
-
Ala
CGC
[ENA]
¢þ
>WENV181789112
OGRO01007615
[OGRO] human gut metagenome; faeces
3771
3846
+
Ala
CGC
[ENA]
¢þ
>WENV183210960
OLQC01010784
[OLQC] human gut metagenome; faeces
2156
2081
-
Ala
CGC
[ENA]
¢þ
>WENV170687882
LFRM01215067
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
103
28
-
Ala
CGC
[ENA]
¢þ
>WENV170721075
LSQX01178568
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4142
4217
+
Ala
CGC
[ENA]
¢þ
>WENV170721268
LSQX01183747
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3932
3857
-
Ala
CGC
[ENA]
¢þ
>WENV170723307
LSQX01263700
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6298
6223
-
Ala
CGC
[ENA]
¢þ
>WENV170725462
LSQX01343309
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1071
996
-
Ala
CGC
[ENA]
¢þ
>WENV170969501
MTKW01030240
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2
77
+
Ala
CGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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