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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001804)
Anticodon = GCA
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250188 (6 seq.)
>WENV170570572
FLOH01000011
[FLOH] marine metagenome; water
306053
305978
-
Cys
GCA
[ENA]
¢þ
>WENV170605029
FUWD010442122
[FUWD] metagenome; unknown
435
360
-
Cys
GCA
[ENA]
¢þ
>WENV170621715
FUWD013070498
[FUWD] metagenome; unknown
312
387
+
Cys
GCA
[ENA]
¢þ
>WENV170629902
FUWD013286191
[FUWD] metagenome; unknown
312
387
+
Cys
GCA
[ENA]
¢þ
>SRA1020587
SRR035083.138440
454 Sequencing (SRP001804)
308
233
-
Cys
GCA
[SRA]
>SRA1041497
SRR035091.250551
454 Sequencing (SRP001812)
99
174
+
Cys
GCA
[SRA]
Identical group No.445997 (3 seq.)
>SRA1020575
SRR035083.136918
454 Sequencing (SRP001804)
117
193
+
Cys
GCA
[SRA]
>SRA1021326
SRR035083.242885
454 Sequencing (SRP001804)
117
193
+
Cys
GCA
[SRA]
>SRA1021814
SRR035083.313041
454 Sequencing (SRP001804)
117
193
+
Cys
GCA
[SRA]
Identical group No.507043 (7 seq.)
>WENV170621056
FUWD013047711
[FUWD] metagenome; unknown
1097
1172
+
Cys
GCA
[ENA]
¢þ
>WENV170629221
FUWD013264516
[FUWD] metagenome; unknown
1097
1172
+
Cys
GCA
[ENA]
¢þ
>SRA1019938
SRR035083.25720
454 Sequencing (SRP001804)
205
280
+
Cys
GCA
[SRA]
>SRA1020021
SRR035083.42733
454 Sequencing (SRP001804)
67
142
+
Cys
GCA
[SRA]
>SRA1022118
SRR035083.355626
454 Sequencing (SRP001804)
103
178
+
Cys
GCA
[SRA]
>SRA1022338
SRR035083.391938
454 Sequencing (SRP001804)
162
237
+
Cys
GCA
[SRA]
>SRA1054578
SRR035099.167708
454 Sequencing (SRP001820)
333
408
+
Cys
GCA
[SRA]
Identical group No.612435 (3 seq.)
>SRA1021315
SRR035083.241289
454 Sequencing (SRP001804)
228
156
-
Cys
GCA
[SRA]
>SRA1021601
SRR035083.279240
454 Sequencing (SRP001804)
153
81
-
Cys
GCA
[SRA]
>SRA1037249
SRR035090.102045
454 Sequencing (SRP001811)
291
219
-
Cys
GCA
[SRA]
Identical group No.647167 (1 seq.)
>SRA1020568
SRR035083.136020
454 Sequencing (SRP001804)
67
142
+
Cys
GCA
[SRA]
Identical group No.647168 (1 seq.)
>SRA1020585
SRR035083.138278
454 Sequencing (SRP001804)
36
111
+
Cys
GCA
[SRA]
Identical group No.686094 (7 seq.)
>SRA1020057
SRR035083.50493
454 Sequencing (SRP001804)
276
350
+
Cys
GCA
[SRA]
>SRA1020346
SRR035083.100075
454 Sequencing (SRP001804)
214
288
+
Cys
GCA
[SRA]
>SRA1020837
SRR035083.171512
454 Sequencing (SRP001804)
349
423
+
Cys
GCA
[SRA]
>SRA1037513
SRR035090.144892
454 Sequencing (SRP001811)
243
317
+
Cys
GCA
[SRA]
>SRA1037694
SRR035090.175527
454 Sequencing (SRP001811)
167
241
+
Cys
GCA
[SRA]
>SRA1053262
SRR035098.370652
454 Sequencing (SRP001819)
182
256
+
Cys
GCA
[SRA]
>SRA1054673
SRR035099.185432
454 Sequencing (SRP001820)
240
166
-
Cys
GCA
[SRA]
Identical group No.710657 (3 seq.)
>WENV170605027
FUWD010441981
[FUWD] metagenome; unknown
169
243
+
Cys
GCA
[ENA]
¢þ
>SRA1020260
SRR035083.84642
454 Sequencing (SRP001804)
61
135
+
Cys
GCA
[SRA]
>SRA1020293
SRR035083.91698
454 Sequencing (SRP001804)
491
565
+
Cys
GCA
[SRA]
Identical group No.775583 (1 seq.)
>SRA1021121
SRR035083.211768
454 Sequencing (SRP001804)
390
317
-
Cys
GCA
[SRA]
Identical group No.775618 (1 seq.)
>SRA1023078
SRR035083.516334
454 Sequencing (SRP001804)
266
340
+
Cys
GCA
[SRA]
Identical group No.779810 (113 seq.)
>W1711136043
LUZT01000001
Chlorobi
Chlorobiales bacterium Clorobi_01 (LUZT)
19961
20034
+
Cys
GCA
[ENA]
¡û
>C171060589
CP017305
Chlorobi
Chlorobaculum limnaeum DSM 1677 (CP017305)
1196154
1196081
-
Cys
GCA
-
¡û
>C007022
AE006470
Chlorobi
Chlorobium tepidum TLS
1080477
1080550
+
Cys
GCA
[Ensembl]
¡û
>C08003592
CP001099
Chlorobi
Chlorobaculum parvum NCIB 8327
1214369
1214442
+
Cys
GCA
[Ensembl]
¡û
>WENV170613971
FUWD012823125
[FUWD] metagenome; unknown
1438
1365
-
Cys
GCA
[ENA]
¢þ
>SRA1019953
SRR035083.29642
454 Sequencing (SRP001804)
26
99
+
Cys
GCA
[SRA]
>SRA1020041
SRR035083.46278
454 Sequencing (SRP001804)
147
220
+
Cys
GCA
[SRA]
>SRA1020046
SRR035083.47626
454 Sequencing (SRP001804)
48
121
+
Cys
GCA
[SRA]
>SRA1020097
SRR035083.57243
454 Sequencing (SRP001804)
261
188
-
Cys
GCA
[SRA]
>SRA1020212
SRR035083.75170
454 Sequencing (SRP001804)
438
365
-
Cys
GCA
[SRA]
>SRA1020304
SRR035083.94052
454 Sequencing (SRP001804)
49
122
+
Cys
GCA
[SRA]
>SRA1020325
SRR035083.97287
454 Sequencing (SRP001804)
20
93
+
Cys
GCA
[SRA]
>SRA1020338
SRR035083.98480
454 Sequencing (SRP001804)
114
187
+
Cys
GCA
[SRA]
>SRA1020339
SRR035083.98663
454 Sequencing (SRP001804)
219
292
+
Cys
GCA
[SRA]
>SRA1020469
SRR035083.119652
454 Sequencing (SRP001804)
425
352
-
Cys
GCA
[SRA]
>SRA1020623
SRR035083.142068
454 Sequencing (SRP001804)
49
122
+
Cys
GCA
[SRA]
>SRA1020874
SRR035083.176576
454 Sequencing (SRP001804)
161
88
-
Cys
GCA
[SRA]
>SRA1020932
SRR035083.187600
454 Sequencing (SRP001804)
353
280
-
Cys
GCA
[SRA]
>SRA1020961
SRR035083.190602
454 Sequencing (SRP001804)
379
306
-
Cys
GCA
[SRA]
>SRA1021047
SRR035083.203225
454 Sequencing (SRP001804)
300
227
-
Cys
GCA
[SRA]
>SRA1021163
SRR035083.219330
454 Sequencing (SRP001804)
440
367
-
Cys
GCA
[SRA]
>SRA1021164
SRR035083.219335
454 Sequencing (SRP001804)
425
352
-
Cys
GCA
[SRA]
>SRA1021301
SRR035083.239060
454 Sequencing (SRP001804)
294
221
-
Cys
GCA
[SRA]
>SRA1021336
SRR035083.245358
454 Sequencing (SRP001804)
103
176
+
Cys
GCA
[SRA]
>SRA1021364
SRR035083.250296
454 Sequencing (SRP001804)
228
155
-
Cys
GCA
[SRA]
>SRA1021461
SRR035083.262017
454 Sequencing (SRP001804)
294
367
+
Cys
GCA
[SRA]
>SRA1021464
SRR035083.262188
454 Sequencing (SRP001804)
162
89
-
Cys
GCA
[SRA]
>SRA1021525
SRR035083.269238
454 Sequencing (SRP001804)
285
212
-
Cys
GCA
[SRA]
>SRA1021594
SRR035083.278782
454 Sequencing (SRP001804)
68
141
+
Cys
GCA
[SRA]
>SRA1021672
SRR035083.290761
454 Sequencing (SRP001804)
42
115
+
Cys
GCA
[SRA]
>SRA1021864
SRR035083.320445
454 Sequencing (SRP001804)
280
207
-
Cys
GCA
[SRA]
>SRA1022042
SRR035083.344101
454 Sequencing (SRP001804)
353
280
-
Cys
GCA
[SRA]
>SRA1022215
SRR035083.368913
454 Sequencing (SRP001804)
296
369
+
Cys
GCA
[SRA]
>SRA1022229
SRR035083.371254
454 Sequencing (SRP001804)
449
521
+
Cys
GCA
[SRA]
>SRA1022456
SRR035083.408547
454 Sequencing (SRP001804)
249
322
+
Cys
GCA
[SRA]
>SRA1022763
SRR035083.456003
454 Sequencing (SRP001804)
260
333
+
Cys
GCA
[SRA]
>SRA1022816
SRR035083.466549
454 Sequencing (SRP001804)
184
111
-
Cys
GCA
[SRA]
>SRA1022882
SRR035083.477749
454 Sequencing (SRP001804)
310
237
-
Cys
GCA
[SRA]
>SRA1022889
SRR035083.478870
454 Sequencing (SRP001804)
71
144
+
Cys
GCA
[SRA]
>SRA1022895
SRR035083.480586
454 Sequencing (SRP001804)
152
225
+
Cys
GCA
[SRA]
>SRA1022981
SRR035083.499425
454 Sequencing (SRP001804)
77
4
-
Cys
GCA
[SRA]
>SRA1023025
SRR035083.507169
454 Sequencing (SRP001804)
326
253
-
Cys
GCA
[SRA]
>SRA1023039
SRR035083.510437
454 Sequencing (SRP001804)
163
90
-
Cys
GCA
[SRA]
>SRA1023052
SRR035083.512307
454 Sequencing (SRP001804)
280
207
-
Cys
GCA
[SRA]
>SRA1026008
SRR035085.125188
454 Sequencing (SRP001806)
334
407
+
Cys
GCA
[SRA]
>SRA1029656
SRR035087.158387
454 Sequencing (SRP001808)
58
131
+
Cys
GCA
[SRA]
>SRA1030904
SRR035087.344339
454 Sequencing (SRP001808)
145
72
-
Cys
GCA
[SRA]
>SRA1032532
SRR035088.39834
454 Sequencing (SRP001809)
332
405
+
Cys
GCA
[SRA]
>SRA1032582
SRR035088.53808
454 Sequencing (SRP001809)
247
174
-
Cys
GCA
[SRA]
>SRA1032879
SRR035088.121126
454 Sequencing (SRP001809)
315
242
-
Cys
GCA
[SRA]
>SRA1033227
SRR035088.200969
454 Sequencing (SRP001809)
319
392
+
Cys
GCA
[SRA]
>SRA1033326
SRR035088.225611
454 Sequencing (SRP001809)
179
252
+
Cys
GCA
[SRA]
>SRA1033368
SRR035088.236755
454 Sequencing (SRP001809)
190
117
-
Cys
GCA
[SRA]
>SRA1033568
SRR035088.290309
454 Sequencing (SRP001809)
61
134
+
Cys
GCA
[SRA]
>SRA1033980
SRR035088.430483
454 Sequencing (SRP001809)
188
115
-
Cys
GCA
[SRA]
>SRA1035003
SRR035089.215953
454 Sequencing (SRP001810)
335
408
+
Cys
GCA
[SRA]
>SRA1036425
SRR035089.519867
454 Sequencing (SRP001810)
176
103
-
Cys
GCA
[SRA]
>SRA1036432
SRR035089.521046
454 Sequencing (SRP001810)
373
300
-
Cys
GCA
[SRA]
>SRA1036812
SRR035090.12771
454 Sequencing (SRP001811)
210
137
-
Cys
GCA
[SRA]
>SRA1036879
SRR035090.30707
454 Sequencing (SRP001811)
167
240
+
Cys
GCA
[SRA]
>SRA1036976
SRR035090.50303
454 Sequencing (SRP001811)
11
84
+
Cys
GCA
[SRA]
>SRA1037002
SRR035090.56809
454 Sequencing (SRP001811)
93
20
-
Cys
GCA
[SRA]
>SRA1037123
SRR035090.77123
454 Sequencing (SRP001811)
360
287
-
Cys
GCA
[SRA]
>SRA1037195
SRR035090.91566
454 Sequencing (SRP001811)
167
240
+
Cys
GCA
[SRA]
>SRA1037239
SRR035090.100695
454 Sequencing (SRP001811)
72
1
-
Cys
GCA
[SRA]
>SRA1037295
SRR035090.108794
454 Sequencing (SRP001811)
189
262
+
Cys
GCA
[SRA]
>SRA1037340
SRR035090.118944
454 Sequencing (SRP001811)
164
237
+
Cys
GCA
[SRA]
>SRA1037391
SRR035090.127832
454 Sequencing (SRP001811)
11
84
+
Cys
GCA
[SRA]
>SRA1037408
SRR035090.129563
454 Sequencing (SRP001811)
187
260
+
Cys
GCA
[SRA]
>SRA1037482
SRR035090.140836
454 Sequencing (SRP001811)
243
316
+
Cys
GCA
[SRA]
>SRA1037504
SRR035090.143284
454 Sequencing (SRP001811)
95
22
-
Cys
GCA
[SRA]
>SRA1037552
SRR035090.152689
454 Sequencing (SRP001811)
415
342
-
Cys
GCA
[SRA]
>SRA1037681
SRR035090.173725
454 Sequencing (SRP001811)
324
251
-
Cys
GCA
[SRA]
>SRA1037724
SRR035090.180672
454 Sequencing (SRP001811)
187
260
+
Cys
GCA
[SRA]
>SRA1037790
SRR035090.196071
454 Sequencing (SRP001811)
183
110
-
Cys
GCA
[SRA]
>SRA1037887
SRR035090.212568
454 Sequencing (SRP001811)
325
398
+
Cys
GCA
[SRA]
>SRA1038009
SRR035090.233234
454 Sequencing (SRP001811)
223
150
-
Cys
GCA
[SRA]
>SRA1038100
SRR035090.245756
454 Sequencing (SRP001811)
219
292
+
Cys
GCA
[SRA]
>SRA1038214
SRR035090.266358
454 Sequencing (SRP001811)
439
366
-
Cys
GCA
[SRA]
>SRA1038232
SRR035090.268918
454 Sequencing (SRP001811)
227
300
+
Cys
GCA
[SRA]
>SRA1038363
SRR035090.291803
454 Sequencing (SRP001811)
54
127
+
Cys
GCA
[SRA]
>SRA1038541
SRR035090.324618
454 Sequencing (SRP001811)
212
139
-
Cys
GCA
[SRA]
>SRA1038617
SRR035090.337499
454 Sequencing (SRP001811)
62
135
+
Cys
GCA
[SRA]
>SRA1038620
SRR035090.337972
454 Sequencing (SRP001811)
5
78
+
Cys
GCA
[SRA]
>SRA1038743
SRR035090.358250
454 Sequencing (SRP001811)
189
262
+
Cys
GCA
[SRA]
>SRA1038776
SRR035090.363896
454 Sequencing (SRP001811)
314
241
-
Cys
GCA
[SRA]
>SRA1038929
SRR035090.396531
454 Sequencing (SRP001811)
56
129
+
Cys
GCA
[SRA]
>SRA1038958
SRR035090.400699
454 Sequencing (SRP001811)
357
284
-
Cys
GCA
[SRA]
>SRA1039004
SRR035090.406754
454 Sequencing (SRP001811)
437
364
-
Cys
GCA
[SRA]
>SRA1039116
SRR035090.428504
454 Sequencing (SRP001811)
136
63
-
Cys
GCA
[SRA]
>SRA1039177
SRR035090.437185
454 Sequencing (SRP001811)
319
392
+
Cys
GCA
[SRA]
>SRA1039258
SRR035090.453395
454 Sequencing (SRP001811)
310
237
-
Cys
GCA
[SRA]
>SRA1039319
SRR035090.465836
454 Sequencing (SRP001811)
26
99
+
Cys
GCA
[SRA]
>SRA1039411
SRR035090.486188
454 Sequencing (SRP001811)
140
213
+
Cys
GCA
[SRA]
>SRA1039425
SRR035090.488303
454 Sequencing (SRP001811)
436
363
-
Cys
GCA
[SRA]
>SRA1039544
SRR035090.512719
454 Sequencing (SRP001811)
420
347
-
Cys
GCA
[SRA]
>SRA1039563
SRR035090.517042
454 Sequencing (SRP001811)
22
95
+
Cys
GCA
[SRA]
>SRA1039804
SRR035090.573869
454 Sequencing (SRP001811)
26
99
+
Cys
GCA
[SRA]
>SRA1039830
SRR035090.579615
454 Sequencing (SRP001811)
326
399
+
Cys
GCA
[SRA]
>SRA1039834
SRR035090.579943
454 Sequencing (SRP001811)
367
294
-
Cys
GCA
[SRA]
>SRA1039870
SRR035090.588660
454 Sequencing (SRP001811)
214
141
-
Cys
GCA
[SRA]
>SRA1039940
SRR035090.609188
454 Sequencing (SRP001811)
140
213
+
Cys
GCA
[SRA]
>SRA1039958
SRR035090.613330
454 Sequencing (SRP001811)
215
288
+
Cys
GCA
[SRA]
>SRA1041253
SRR035091.220248
454 Sequencing (SRP001812)
191
264
+
Cys
GCA
[SRA]
>SRA1045119
SRR035092.415034
454 Sequencing (SRP001813)
212
285
+
Cys
GCA
[SRA]
>SRA1046223
SRR035093.256544
454 Sequencing (SRP001814)
96
23
-
Cys
GCA
[SRA]
>SRA1054097
SRR035099.56094
454 Sequencing (SRP001820)
227
154
-
Cys
GCA
[SRA]
>SRA1054106
SRR035099.58683
454 Sequencing (SRP001820)
325
252
-
Cys
GCA
[SRA]
>SRA1054387
SRR035099.120853
454 Sequencing (SRP001820)
436
363
-
Cys
GCA
[SRA]
>SRA1054402
SRR035099.125497
454 Sequencing (SRP001820)
227
154
-
Cys
GCA
[SRA]
>SRA1054666
SRR035099.184200
454 Sequencing (SRP001820)
254
327
+
Cys
GCA
[SRA]
>SRA1054741
SRR035099.204540
454 Sequencing (SRP001820)
227
154
-
Cys
GCA
[SRA]
>W1610947163
LUZT01000001
Chlorobi
Chlorobiales bacterium Clorobi_01 (LUZT)
19961
20034
+
Cys
GCA
[ENA]
¡û
Identical group No.794111 (4 seq.)
>WENV170605024
FUWD010441873
[FUWD] metagenome; unknown
80
7
-
Cys
GCA
[ENA]
¢þ
>SRA1020024
SRR035083.43111
454 Sequencing (SRP001804)
80
7
-
Cys
GCA
[SRA]
>SRA1050254
SRR035095.222757
454 Sequencing (SRP001816)
87
14
-
Cys
GCA
[SRA]
>SRA1054714
SRR035099.194050
454 Sequencing (SRP001820)
206
133
-
Cys
GCA
[SRA]
Identical group No.805242 (4 seq.)
>WENV170611752
FUWD012388512
[FUWD] metagenome; unknown
83
13
-
Cys
GCA
[ENA]
¢þ
>SRA1021868
SRR035083.321193
454 Sequencing (SRP001804)
285
215
-
Cys
GCA
[SRA]
>SRA1021943
SRR035083.330256
454 Sequencing (SRP001804)
284
214
-
Cys
GCA
[SRA]
>SRA1023093
SRR035083.518974
454 Sequencing (SRP001804)
285
215
-
Cys
GCA
[SRA]
Identical group No.835486 (1 seq.)
>SRA1020394
SRR035083.107351
454 Sequencing (SRP001804)
67
138
+
Cys
GCA
[SRA]
Identical group No.835496 (1 seq.)
>SRA1022649
SRR035083.436679
454 Sequencing (SRP001804)
391
321
-
Cys
GCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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