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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TAA
HIT:
18 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29541 (5 seq.)
>WENV170602325
FUWD010226403
[FUWD] metagenome; unknown
285
198
-
Leu
TAA
[ENA]
¢þ
>WENV170621139
FUWD013050044
[FUWD] metagenome; unknown
1051
964
-
Leu
TAA
[ENA]
¢þ
>WENV170629308
FUWD013266734
[FUWD] metagenome; unknown
1051
964
-
Leu
TAA
[ENA]
¢þ
>SRA1017834
SRR035082.204241
454 Sequencing (SRP001803)
285
198
-
Leu
TAA
[SRA]
>SRA1026160
SRR035085.155844
454 Sequencing (SRP001806)
342
429
+
Leu
TAA
[SRA]
Identical group No.29546 (1 seq.)
>SRA1026656
SRR035085.251280
454 Sequencing (SRP001806)
117
206
+
Leu
TAA
[SRA]
Identical group No.46723 (2 seq.)
>WENV170613250
FUWD012792016
[FUWD] metagenome; unknown
443
530
+
Leu
TAA
[ENA]
¢þ
>SRA1026230
SRR035085.167418
454 Sequencing (SRP001806)
113
26
-
Leu
TAA
[SRA]
Identical group No.56222 (5 seq.)
>W131157556
AQSK01000189
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
29848
29761
-
Leu
TAA
[ENA]
¡û
>WENV170624830
FUWD013187433
[FUWD] metagenome; unknown
6783
6696
-
Leu
TAA
[ENA]
¢þ
>WENV170633098
FUWD013391324
[FUWD] metagenome; unknown
6783
6696
-
Leu
TAA
[ENA]
¢þ
>SRA1025989
SRR035085.121815
454 Sequencing (SRP001806)
357
270
-
Leu
TAA
[SRA]
>SRA1026811
SRR035085.297438
454 Sequencing (SRP001806)
88
175
+
Leu
TAA
[SRA]
Identical group No.56224 (8 seq.)
>WENV183800735
PVBE010612964
[PVBE] marine metagenome; water
186
273
+
Leu
TAA
[ENA]
¢þ
>WENV170017585
BARU01002011
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
530
617
+
Leu
TAA
[ENA]
¢þ
>WENV170605020
FUWD010441545
[FUWD] metagenome; unknown
29
116
+
Leu
TAA
[ENA]
¢þ
>WENV170698840
LGVF01427963
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1656
1743
+
Leu
TAA
[ENA]
¢þ
>SRA1026103
SRR035085.143678
454 Sequencing (SRP001806)
67
154
+
Leu
TAA
[SRA]
>SRA1036559
SRR035089.548123
454 Sequencing (SRP001810)
88
1
-
Leu
TAA
[SRA]
>SRA1049087
SRR035095.17870
454 Sequencing (SRP001816)
168
255
+
Leu
TAA
[SRA]
>SRA1049223
SRR035095.40504
454 Sequencing (SRP001816)
167
254
+
Leu
TAA
[SRA]
Identical group No.56235 (4 seq.)
>WENV170622540
FUWD013108273
[FUWD] metagenome; unknown
1638
1551
-
Leu
TAA
[ENA]
¢þ
>WENV170630435
FUWD013308435
[FUWD] metagenome; unknown
4713
4800
+
Leu
TAA
[ENA]
¢þ
>SRA1026655
SRR035085.251222
454 Sequencing (SRP001806)
430
343
-
Leu
TAA
[SRA]
>SRA1044111
SRR035092.225759
454 Sequencing (SRP001813)
247
334
+
Leu
TAA
[SRA]
Identical group No.73179 (7 seq.)
>WENV170677988
LDZT01010304
[LDZT] terrestrial metagenome; oil reservoir sample SB1
4405
4319
-
Leu
TAA
[ENA]
¢þ
>WENV170678010
LDZT01010397
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2852
2766
-
Leu
TAA
[ENA]
¢þ
>SRA1026027
SRR035085.129829
454 Sequencing (SRP001806)
254
340
+
Leu
TAA
[SRA]
>W1610613973
LGGO01000072
Unclassified
candidate division WS6 bacterium 34_10 [LGGO]
4405
4319
-
Leu
TAA
[ENA]
¡û
>W1610613995
LGGO01000165
Unclassified
candidate division WS6 bacterium 34_10 [LGGO]
2852
2766
-
Leu
TAA
[ENA]
¡û
>W1710735056
LGGO01000072
Unclassified
candidate division WS6 bacterium 34_10 [LGGO]
4405
4319
-
Leu
TAA
[ENA]
¡û
>W1710735078
LGGO01000165
Unclassified
candidate division WS6 bacterium 34_10 [LGGO]
2852
2766
-
Leu
TAA
[ENA]
¡û
Identical group No.73180 (15 seq.)
>WENV180095374
MTBK01065349
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
746
663
-
Leu
TAA
[ENA]
¢þ
>WENV170677855
LDZT01009779
[LDZT] terrestrial metagenome; oil reservoir sample SB1
3942
3856
-
Leu
TAA
[ENA]
¢þ
>WENV170678016
LDZT01010446
[LDZT] terrestrial metagenome; oil reservoir sample SB1
12
98
+
Leu
TAA
[ENA]
¢þ
>WENV170678021
LDZT01010457
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2205
2119
-
Leu
TAA
[ENA]
¢þ
>WENV170679212
LDZU01008945
[LDZU] terrestrial metagenome; oil reservoir sample SB2
7424
7338
-
Leu
TAA
[ENA]
¢þ
>WENV170679223
LDZU01008970
[LDZU] terrestrial metagenome; oil reservoir sample SB2
4968
5054
+
Leu
TAA
[ENA]
¢þ
>WENV170679228
LDZU01009021
[LDZU] terrestrial metagenome; oil reservoir sample SB2
2673
2759
+
Leu
TAA
[ENA]
¢þ
>WENV170718853
LSQX01092743
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3751
3834
+
Leu
TAA
[ENA]
¢þ
>WENV170727177
LSQX01407301
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3170
3087
-
Leu
TAA
[ENA]
¢þ
>WENV170978714
MTKZ01058889
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
406
323
-
Leu
TAA
[ENA]
¢þ
>SRA1026281
SRR035085.178721
454 Sequencing (SRP001806)
415
498
+
Leu
TAA
[SRA]
>W1610614001
LGGO01000214
Unclassified
candidate division WS6 bacterium 34_10 [LGGO]
12
98
+
Leu
TAA
[ENA]
¡û
>W1610614006
LGGO01000225
Unclassified
candidate division WS6 bacterium 34_10 [LGGO]
2205
2119
-
Leu
TAA
[ENA]
¡û
>W1710735084
LGGO01000214
Unclassified
candidate division WS6 bacterium 34_10 [LGGO]
12
98
+
Leu
TAA
[ENA]
¡û
>W1710735089
LGGO01000225
Unclassified
candidate division WS6 bacterium 34_10 [LGGO]
2205
2119
-
Leu
TAA
[ENA]
¡û
Identical group No.73242 (1 seq.)
>SRA1025513
SRR035085.29104
454 Sequencing (SRP001806)
49
133
+
Leu
TAA
[SRA]
Identical group No.73257 (1 seq.)
>SRA1026069
SRR035085.135982
454 Sequencing (SRP001806)
91
177
+
Leu
TAA
[SRA]
Identical group No.73262 (4 seq.)
>WENV170613139
FUWD012782154
[FUWD] metagenome; unknown
597
681
+
Leu
TAA
[ENA]
¢þ
>SRA1026196
SRR035085.161694
454 Sequencing (SRP001806)
246
162
-
Leu
TAA
[SRA]
>SRA1042339
SRR035091.374555
454 Sequencing (SRP001812)
367
451
+
Leu
TAA
[SRA]
>SRA1043763
SRR035092.171700
454 Sequencing (SRP001813)
131
215
+
Leu
TAA
[SRA]
Identical group No.73267 (2 seq.)
>WENV170607856
FUWD010861693
[FUWD] metagenome; unknown
499
415
-
Leu
TAA
[ENA]
¢þ
>SRA1026313
SRR035085.184388
454 Sequencing (SRP001806)
508
424
-
Leu
TAA
[SRA]
Identical group No.73268 (1 seq.)
>SRA1026483
SRR035085.214002
454 Sequencing (SRP001806)
366
449
+
Leu
TAA
[SRA]
Identical group No.73274 (3 seq.)
>WENV170603316
FUWD010300920
[FUWD] metagenome; unknown
441
527
+
Leu
TAA
[ENA]
¢þ
>SRA1026638
SRR035085.246412
454 Sequencing (SRP001806)
347
433
+
Leu
TAA
[SRA]
>SRA1047989
SRR035094.83255
454 Sequencing (SRP001815)
70
153
+
Leu
TAA
[SRA]
Identical group No.73277 (1 seq.)
>SRA1026687
SRR035085.260505
454 Sequencing (SRP001806)
243
327
+
Leu
TAA
[SRA]
Identical group No.100005 (3 seq.)
>WENV170623586
FUWD013159196
[FUWD] metagenome; unknown
1047
962
-
Leu
TAA
[ENA]
¢þ
>WENV170631863
FUWD013368698
[FUWD] metagenome; unknown
1047
962
-
Leu
TAA
[ENA]
¢þ
>SRA1026035
SRR035085.131076
454 Sequencing (SRP001806)
320
235
-
Leu
TAA
[SRA]
Identical group No.100008 (1 seq.)
>SRA1026112
SRR035085.146319
454 Sequencing (SRP001806)
299
216
-
Leu
TAA
[SRA]
Identical group No.100018 (2 seq.)
>W1711421414
MHYK01000346
Planctomycetota
Planctomycetes bacterium RBG_16_55_9 [MHYK]
58195
58277
+
Leu
TAA
[ENA]
¡û
>SRA1026818
SRR035085.299904
454 Sequencing (SRP001806)
176
92
-
Leu
TAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK