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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = TCC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525589 (1 seq.)
>SRA1015005
SRR023845.421049
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
49
122
+
Gly
TCC
[SRA]
Identical group No.697315 (1 seq.)
>SRA1014982
SRR023845.409596
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
10
82
+
Gly
TCC
[SRA]
Identical group No.761293 (7 seq.)
>SRA1015356
SRR023846.29497
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
118
44
-
Gly
TCC
[SRA]
>SRA1015403
SRR023846.46408
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
241
167
-
Gly
TCC
[SRA]
>SRA1015423
SRR023846.51695
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
179
253
+
Gly
TCC
[SRA]
>SRA1015437
SRR023846.56430
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
241
167
-
Gly
TCC
[SRA]
>SRA1015558
SRR023846.111234
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
42
115
+
Gly
TCC
[SRA]
>SRA1015967
SRR023846.288370
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
103
29
-
Gly
TCC
[SRA]
>SRA1016123
SRR023846.356285
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
74
148
+
Gly
TCC
[SRA]
Identical group No.761306 (1 seq.)
>SRA1016321
SRR023846.447668
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
181
110
-
Gly
TCC
[SRA]
Identical group No.828358 (1 seq.)
>SRA1016313
SRR023846.445464
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
107
37
-
Gly
TCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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