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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = GGC
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253216 (1 seq.)
>At1834
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
920870
920947
+
Ala
GGC
[Ensembl]
¡û
Identical group No.275018 (2 seq.)
>A171002515
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1143006
1142931
-
Ala
GGC
-
¡û
>At1144
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1049964
1049891
-
Ala
GGC
[Ensembl]
¡û
Identical group No.322026 (1 seq.)
>A171005681
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
1225794
1225721
-
Ala
GGC
-
¡û
Identical group No.336250 (13 seq.)
>A171001474
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
431948
431872
-
Ala
GGC
-
¡û
>A171006790
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
288573
288649
+
Ala
GGC
-
¡û
>W1910228303
FNMU01000001
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
102793
102869
+
Ala
GGC
[ENA]
¡û
>W1910471794
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
628983
629059
+
Ala
GGC
[ENA]
¡û
>W1910582976
JWTK01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
380985
380909
-
Ala
GGC
[ENA]
¡û
>W1910672532
MCNQ01000002
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
9
83
+
Ala
GGC
[ENA]
¡û
>W1910672565
MCNQ01000017
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
9
83
+
Ala
GGC
[ENA]
¡û
>W1911492111
OBDR01000001
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
5
79
+
Ala
GGC
[ENA]
¡û
>W1911492132
OBDR01000005
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
5
79
+
Ala
GGC
[ENA]
¡û
>W1911633757
PVBU01000004
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
32248
32322
+
Ala
GGC
[ENA]
¡û
>W1911653199
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
698049
698124
+
Ala
GGC
[ENA]
¡û
>W1610919858
LSRU01000020
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
11244
11318
+
Ala
GGC
[ENA]
¡û
>W1611052506
MAFX01000027
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
4318
4244
-
Ala
GGC
[ENA]
¡û
Identical group No.338080 (2 seq.)
>A171001559
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
172642
172567
-
Ala
GGC
-
¡û
>W1610000603
ABHB01000001
Euryarchaeota
Methanococcus voltae A3 [ABHB]
1202169
1202094
-
Ala
GGC
[ENA]
¡û
Identical group No.338095 (2 seq.)
>A171001245
CP001899
Euryarchaeota
Ferroglobus placidus DSM 10642 [CP001899]
510401
510326
-
Ala
GGC
-
¡û
>W1610001597
ACYZ01000007
Euryarchaeota
Ferroglobus placidus DSM 10642 [ACYZ]
35258
35183
-
Ala
GGC
[ENA]
¡û
Identical group No.338244 (1 seq.)
>A171006135
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
916586
916513
-
Ala
GGC
-
¡û
Identical group No.349505 (6 seq.)
>A171000270
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
1497621
1497696
+
Ala
GGC
-
¡û
>At1102
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
326141
326068
-
Ala
GGC
[Ensembl]
¡û
>At1178
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
435277
435204
-
Ala
GGC
[Ensembl]
¡û
>W1610000361
AAWX01000001
Euryarchaeota
Methanococcus vannielii SB [AAWX]
173280
173207
-
Ala
GGC
[ENA]
¡û
>W1610000458
AAZM01000001
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
662569
662645
+
Ala
GGC
[ENA]
¡û
>W1610000565
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
598391
598467
+
Ala
GGC
[ENA]
¡û
Identical group No.352436 (2 seq.)
>At1050
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
492159
492232
+
Ala
GGC
[Ensembl]
¡û
>W1610000311
AAWI01000001
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
4161
4237
+
Ala
GGC
[ENA]
¡û
Identical group No.361334 (2 seq.)
>A171001487
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1304935
1305011
+
Ala
GGC
-
¡û
>W1610001148
ACQY01000007
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
46654
46730
+
Ala
GGC
[ENA]
¡û
Identical group No.372482 (2 seq.)
>A171001021
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1683177
1683101
-
Ala
GGC
-
¡û
>W1610001540
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
536320
536396
+
Ala
GGC
[ENA]
¡û
Identical group No.372616 (1 seq.)
>A171001821
CP002278
Euryarchaeota
Methanothermus fervidus DSM 2088 [CP002278]
388319
388244
-
Ala
GGC
-
¡û
Identical group No.372642 (1 seq.)
>A171006401
CP012986
Euryarchaeota
Nanohaloarchaea archaeon SG9 [CP012986]
645093
645166
+
Ala
GGC
-
¡û
Identical group No.382541 (1 seq.)
>At1292
AE009439
Euryarchaeota
Methanopyrus kandleri AV19 [AE009439]
51546
51622
+
Ala
GGC
[Ensembl]
¡û
Identical group No.407522 (1 seq.)
>A178000161
CP002069
Euryarchaeota
Methanohalobium evestigatum Z-7303 [CP002069]
1364132
1364236
+
Ala
GGC
-
¡û
Identical group No.422928 (1 seq.)
>A171003664
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
1846110
1846183
+
Ala
GGC
-
¡û
Identical group No.485702 (1 seq.)
>A171002274
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
497405
497333
-
Ala
GGC
-
¡û
Identical group No.538525 (6 seq.)
>A171002029
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
2231542
2231614
+
Ala
GGC
-
¡û
>W1910574910
JQJK01000007
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
311014
310942
-
Ala
GGC
[ENA]
¡û
>W1910574954
JQKN01000002
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
270503
270575
+
Ala
GGC
[ENA]
¡û
>W1910575120
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
309250
309178
-
Ala
GGC
[ENA]
¡û
>W1910635121
LMVM01000001
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
275729
275657
-
Ala
GGC
[ENA]
¡û
>W1910655451
LZPM01000018
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
176218
176146
-
Ala
GGC
[ENA]
¡û
Identical group No.603277 (1 seq.)
>A171007686
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
469744
469672
-
Ala
GGC
-
¡û
Identical group No.655463 (32 seq.)
>A171001122
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
1456445
1456516
+
Ala
GGC
-
¡û
>A171001312
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
2453284
2453212
-
Ala
GGC
-
¡û
>A171002467
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
2172430
2172358
-
Ala
GGC
-
¡û
>A171003087
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
933399
933471
+
Ala
GGC
-
¡û
>A171006926
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
3524876
3524948
+
Ala
GGC
-
¡û
>A171006987
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
429514
429442
-
Ala
GGC
-
¡û
>W1910226916
FNFE01000002
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
28806
28734
-
Ala
GGC
[ENA]
¡û
>W1910227131
FNLC01000001
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
744032
743960
-
Ala
GGC
[ENA]
¡û
>W1910229305
FNWL01000001
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
642617
642689
+
Ala
GGC
[ENA]
¡û
>W1910229937
FOIS01000002
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
639759
639831
+
Ala
GGC
[ENA]
¡û
>W1910230244
FOKW01000003
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
38758
38686
-
Ala
GGC
[ENA]
¡û
>W1910230453
FORO01000022
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
29989
29917
-
Ala
GGC
[ENA]
¡û
>W1910340487
FTNP01000001
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
622773
622845
+
Ala
GGC
[ENA]
¡û
>W1910575870
JROF01000003
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
149193
149121
-
Ala
GGC
[ENA]
¡û
>W1910657554
MASN01000017
Euryarchaeota
Natrialba sp. SSL1 [MASN]
62638
62566
-
Ala
GGC
[ENA]
¡û
>W1911580816
PEND01000004
Euryarchaeota
Halegenticoccus soli SYSU A9-0 [PEND]
284588
284659
+
Ala
GGC
[ENA]
¡û
>W1911591341
PKKI01000031
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
27436
27508
+
Ala
GGC
[ENA]
¡û
>W1610001039
ACIT01000001
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
586068
585994
-
Ala
GGC
[ENA]
¡û
>W1610004073
AGFZ01000124
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
17058
16986
-
Ala
GGC
[ENA]
¡û
>W1610004106
AGIM01000011
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
135145
135219
+
Ala
GGC
[ENA]
¡û
>W1610011720
AOHS01000030
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
82585
82659
+
Ala
GGC
[ENA]
¡û
>W1610011923
AOHW01000044
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
84520
84448
-
Ala
GGC
[ENA]
¡û
>W1610012019
AOHZ01000012
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
6122
6051
-
Ala
GGC
[ENA]
¡û
>W1610012185
AOIC01000118
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
22402
22328
-
Ala
GGC
[ENA]
¡û
>W1610012489
AOIM01000039
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
10715
10789
+
Ala
GGC
[ENA]
¡û
>W1610012531
AOIN01000092
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
72199
72125
-
Ala
GGC
[ENA]
¡û
>W1610012746
AOIS01000067
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
106882
106953
+
Ala
GGC
[ENA]
¡û
>W1610014411
AOLZ01000028
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
17237
17165
-
Ala
GGC
[ENA]
¡û
>W1610014470
AOMA01000110
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
595
524
-
Ala
GGC
[ENA]
¡û
>W1610019011
ARPH01000002
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
84674
84602
-
Ala
GGC
[ENA]
¡û
>W1610082988
CBMA010000029
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
135035
135107
+
Ala
GGC
[ENA]
¡û
>W1610671374
LKCV01000084
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
1015
1086
+
Ala
GGC
[ENA]
¡û
Identical group No.655779 (3 seq.)
>A171007188
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
1116358
1116429
+
Ala
GGC
-
¡û
>A171007545
LT158599
Euryarchaeota
Methanoculleus bourgensis [LT158599]
1142998
1143069
+
Ala
GGC
-
¡û
>A171007613
LT549891
Euryarchaeota
Methanoculleus bourgensis [LT549891]
1246152
1246223
+
Ala
GGC
-
¡û
Identical group No.676165 (1 seq.)
>At0680
CP000780
Euryarchaeota
Methanoregula boonei 6A8 [CP000780]
735064
734993
-
Ala
GGC
[Ensembl]
¡û
Identical group No.696997 (4 seq.)
>At1229
CP000559
Euryarchaeota
Methanocorpusculum labreanum Z [CP000559]
1063938
1063867
-
Ala
GGC
[Ensembl]
¡û
>W1930011547
LMVO01000006
Euryarchaeota
Methanocorpusculum parvum XII [LMVO]
18575
18646
+
Ala
GGC
[ENA]
¡û
>W1630000899
AUMX01000016
Euryarchaeota
Methanocorpusculum bavaricum DSM 4179 [AUMX]
29347
29276
-
Ala
GGC
[ENA]
¡û
>W1630018558
LUYI01000334
Euryarchaeota
Methanomicrobiales archaeon Methan_05 [LUYI]
1578
1650
+
Ala
GGC
[ENA]
¡û
Identical group No.697069 (3 seq.)
>A171006899
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
522642
522570
-
Ala
GGC
-
¡û
>W1910226713
FNBK01000001
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
432
504
+
Ala
GGC
[ENA]
¡û
>W1910229696
FOCX01000006
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
117495
117567
+
Ala
GGC
[ENA]
¡û
Identical group No.697579 (2 seq.)
>A171001782
CP002117
Euryarchaeota
Methanolacinia petrolearia DSM 11571 [CP002117]
840470
840398
-
Ala
GGC
-
¡û
>W1610029770
AXDV01000022
Euryarchaeota
Methanolacinia paynteri DSM 2545 [AXDV]
1372
1443
+
Ala
GGC
[ENA]
¡û
Identical group No.745156 (1 seq.)
>A171002834
CP003167
Euryarchaeota
Methanoregula formicica SMSP [CP003167]
2021331
2021402
+
Ala
GGC
-
¡û
Identical group No.761245 (1 seq.)
>C151003905
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
329023
329094
+
Ala
GGC
[Ensembl]
¡û
Identical group No.771504 (1 seq.)
>A171002108
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
1888993
1888921
-
Ala
GGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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